Variant report

Variant	rs7691182
Chromosome Location	chr4:160221434-160221435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10034409	1.00[EUR][1000 genomes]
rs11946474	1.00[EUR][1000 genomes]
rs2464794	1.00[EUR][1000 genomes]
rs28755457	1.00[EUR][1000 genomes]
rs28883584	1.00[EUR][1000 genomes]
rs2952610	1.00[EUR][1000 genomes]
rs57147050	1.00[EUR][1000 genomes]
rs57299850	1.00[EUR][1000 genomes]
rs57659423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57696778	1.00[EUR][1000 genomes]
rs60646338	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61498926	1.00[EUR][1000 genomes]
rs72965979	1.00[EUR][1000 genomes]
rs72967707	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72967709	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72967714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72967717	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72967780	1.00[EUR][1000 genomes]
rs72967798	1.00[EUR][1000 genomes]
rs7664778	1.00[EUR][1000 genomes]
rs7679267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9685433	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160186800-160225400	Weak transcription	Primary B cells from cord blood	blood
2	chr4:160189400-160235200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:160193400-160240200	Weak transcription	Gastric	stomach
4	chr4:160194400-160235600	Weak transcription	Fetal Stomach	stomach
5	chr4:160194400-160236600	Weak transcription	Primary T cells from cord blood	blood
6	chr4:160195200-160225600	Weak transcription	Placenta	Placenta
7	chr4:160200600-160235600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:160205800-160236400	Weak transcription	Pancreas	Pancrea
9	chr4:160205800-160260600	Weak transcription	Aorta	Aorta
10	chr4:160206200-160229000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:160210000-160229200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:160210600-160225400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr4:160210600-160238000	Weak transcription	Adipose Nuclei	Adipose
14	chr4:160210800-160226000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:160215200-160236800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr4:160215400-160225600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr4:160215600-160225800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr4:160216200-160225800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:160216600-160237600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr4:160217000-160225800	Weak transcription	Left Ventricle	heart
21	chr4:160217000-160226000	Weak transcription	Small Intestine	intestine
22	chr4:160217000-160259400	Weak transcription	Fetal Brain Male	brain
23	chr4:160217400-160229200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr4:160218200-160229000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr4:160218400-160229200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:160218400-160232400	Weak transcription	Colon Smooth Muscle	Colon
27	chr4:160218600-160226400	Weak transcription	Fetal Heart	heart
28	chr4:160218600-160232400	Weak transcription	Psoas Muscle	Psoas
29	chr4:160219800-160226600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:160220000-160225400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:160220000-160225400	Weak transcription	Fetal Muscle Leg	muscle
32	chr4:160220000-160225600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr4:160220000-160225800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:160220000-160225800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:160220000-160225800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:160220000-160225800	Weak transcription	Fetal Lung	lung
37	chr4:160220000-160232400	Weak transcription	Right Ventricle	heart
38	chr4:160220000-160232600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr4:160220000-160244400	Weak transcription	Rectal Smooth Muscle	rectum
40	chr4:160220200-160225400	Weak transcription	Liver	Liver
41	chr4:160220200-160225800	Weak transcription	HUVEC	blood vessel
42	chr4:160220400-160225400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr4:160220400-160225800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr4:160220400-160226000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:160220400-160229000	Weak transcription	NHDF-Ad	bronchial
46	chr4:160220400-160229000	Weak transcription	NHLF	lung
47	chr4:160220400-160229000	Weak transcription	Osteobl	bone
48	chr4:160220400-160229200	Weak transcription	Brain Hippocampus Middle	brain
49	chr4:160220400-160229200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr4:160220400-160229600	Weak transcription	HSMMtube	muscle

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