Variant report
| Variant | rs57299850 |
|---|---|
| Chromosome Location | chr4:160300759-160300760 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10013961 | 1.00[ASN][1000 genomes] |
| rs10034409 | 1.00[EUR][1000 genomes] |
| rs11946474 | 1.00[EUR][1000 genomes] |
| rs2464794 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28462119 | 1.00[ASN][1000 genomes] |
| rs28545001 | 1.00[ASN][1000 genomes] |
| rs28755457 | 1.00[EUR][1000 genomes] |
| rs28883584 | 1.00[EUR][1000 genomes] |
| rs2951103 | 1.00[AMR][1000 genomes] |
| rs2952610 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57147050 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57659423 | 1.00[EUR][1000 genomes] |
| rs57696778 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60646338 | 1.00[EUR][1000 genomes] |
| rs61498926 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72965979 | 1.00[EUR][1000 genomes] |
| rs72967707 | 1.00[EUR][1000 genomes] |
| rs72967709 | 1.00[EUR][1000 genomes] |
| rs72967714 | 1.00[EUR][1000 genomes] |
| rs72967717 | 1.00[EUR][1000 genomes] |
| rs72967780 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72967798 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7664778 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7679267 | 1.00[EUR][1000 genomes] |
| rs7691182 | 1.00[EUR][1000 genomes] |
| rs9631759 | 1.00[ASN][1000 genomes] |
| rs9685433 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1022771 | chr4:160188801-160324683 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:160275200-160303800 | Weak transcription | Right Atrium | heart |
