Variant report

Variant	rs28545001
Chromosome Location	chr4:160287243-160287244
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:160279549..160283118-chr4:160285686..160287785,3	MCF-7	breast:
2	chr4:160263772..160266202-chr4:160285402..160287299,2	MCF-7	breast:
3	chr4:160280140..160282887-chr4:160286414..160288153,2	K562	blood:
4	chr4:160283609..160286187-chr4:160286317..160288730,2	K562	blood:

Variant related genes	Relation type
ENSG00000109756	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10010022	1.00[EUR][1000 genomes]
rs10013961	1.00[ASN][1000 genomes]
rs10024227	1.00[EUR][1000 genomes]
rs12108274	1.00[EUR][1000 genomes]
rs28450538	1.00[EUR][1000 genomes]
rs28462119	1.00[ASN][1000 genomes]
rs28705976	1.00[EUR][1000 genomes]
rs28716121	1.00[EUR][1000 genomes]
rs28847955	1.00[EUR][1000 genomes]
rs57147050	1.00[ASN][1000 genomes]
rs57234842	1.00[EUR][1000 genomes]
rs57299850	1.00[ASN][1000 genomes]
rs57640283	1.00[EUR][1000 genomes]
rs57696778	1.00[ASN][1000 genomes]
rs57894439	1.00[EUR][1000 genomes]
rs57946912	1.00[EUR][1000 genomes]
rs58730870	1.00[EUR][1000 genomes]
rs59136094	1.00[EUR][1000 genomes]
rs59423717	1.00[EUR][1000 genomes]
rs61498926	1.00[ASN][1000 genomes]
rs6820465	1.00[EUR][1000 genomes]
rs72967780	1.00[ASN][1000 genomes]
rs72967798	1.00[ASN][1000 genomes]
rs7664778	1.00[ASN][1000 genomes]
rs9631759	1.00[ASN][1000 genomes]
rs9685433	1.00[ASN][1000 genomes]
rs9994151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160266800-160287600	Weak transcription	Psoas Muscle	Psoas
2	chr4:160274200-160289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:160275200-160287800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:160275200-160303800	Weak transcription	Right Atrium	heart
5	chr4:160275400-160288000	Weak transcription	A549	lung
6	chr4:160280200-160289800	Weak transcription	Spleen	Spleen
7	chr4:160280200-160290800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:160280200-160295200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:160280600-160288000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:160280600-160288200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:160280600-160290200	Weak transcription	Pancreas	Pancrea
12	chr4:160280800-160287400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:160280800-160287600	Weak transcription	HepG2	liver
14	chr4:160280800-160288000	Weak transcription	Left Ventricle	heart
15	chr4:160280800-160288200	Weak transcription	Fetal Thymus	thymus
16	chr4:160280800-160288200	Weak transcription	HSMMtube	muscle
17	chr4:160280800-160289600	Weak transcription	Lung	lung
18	chr4:160281200-160288000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr4:160281200-160288000	Weak transcription	Brain Anterior Caudate	brain
20	chr4:160281200-160288000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:160281200-160288200	Weak transcription	GM12878-XiMat	blood
22	chr4:160281200-160292000	Weak transcription	Brain Germinal Matrix	brain
23	chr4:160281800-160287400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr4:160282000-160287800	Weak transcription	Brain Angular Gyrus	brain
25	chr4:160282000-160287800	Weak transcription	Fetal Brain Female	brain
26	chr4:160282000-160288000	Weak transcription	Fetal Lung	lung
27	chr4:160282000-160288400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr4:160282200-160287600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr4:160282200-160288200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:160282200-160288400	Weak transcription	Primary B cells from cord blood	blood
31	chr4:160282200-160291200	Weak transcription	Aorta	Aorta
32	chr4:160282400-160288000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:160282400-160288000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr4:160282400-160288000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr4:160282400-160288600	Weak transcription	Fetal Heart	heart
36	chr4:160282400-160288800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr4:160282600-160287800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:160282600-160287800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr4:160282600-160287800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr4:160282600-160288000	Weak transcription	HMEC	breast
41	chr4:160282600-160288000	Weak transcription	NH-A	brain
42	chr4:160282600-160288200	Weak transcription	NHLF	lung
43	chr4:160282600-160288200	Weak transcription	Osteobl	bone
44	chr4:160282800-160287600	Weak transcription	NHEK	skin
45	chr4:160282800-160287800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr4:160282800-160288000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr4:160282800-160288000	Weak transcription	Placenta	Placenta
48	chr4:160282800-160288200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:160282800-160288200	Weak transcription	Fetal Muscle Leg	muscle
50	chr4:160282800-160291000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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