Variant report

Variant	rs58730870
Chromosome Location	chr4:160268375-160268376
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10010022	1.00[EUR][1000 genomes]
rs10024227	1.00[EUR][1000 genomes]
rs12108274	1.00[EUR][1000 genomes]
rs28450538	1.00[EUR][1000 genomes]
rs28545001	1.00[EUR][1000 genomes]
rs28705976	1.00[EUR][1000 genomes]
rs28716121	1.00[EUR][1000 genomes]
rs28847955	1.00[EUR][1000 genomes]
rs57234842	1.00[EUR][1000 genomes]
rs57640283	1.00[EUR][1000 genomes]
rs57894439	1.00[EUR][1000 genomes]
rs57946912	1.00[EUR][1000 genomes]
rs59136094	1.00[EUR][1000 genomes]
rs59423717	1.00[EUR][1000 genomes]
rs6820465	1.00[EUR][1000 genomes]
rs9994151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160226200-160270600	Weak transcription	Small Intestine	intestine
2	chr4:160230200-160270800	Weak transcription	A549	lung
3	chr4:160232200-160274600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:160237000-160279400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:160237000-160284400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:160237400-160274600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:160238600-160282200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:160241000-160281600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:160249600-160274000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr4:160250000-160283400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:160250000-160284400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:160250400-160285200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr4:160250800-160284600	Strong transcription	Liver	Liver
14	chr4:160258000-160283200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr4:160258600-160276000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr4:160258800-160269800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:160259000-160279200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr4:160259000-160279200	Strong transcription	Adipose Nuclei	Adipose
19	chr4:160259000-160282800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:160259000-160282800	Strong transcription	Placenta	Placenta
21	chr4:160259200-160269400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr4:160259200-160272800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr4:160259200-160279200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:160259200-160283000	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:160259400-160268400	Strong transcription	Primary hematopoietic stem cells	blood
26	chr4:160259400-160268600	Strong transcription	Duodenum Mucosa	Duodenum
27	chr4:160259400-160270000	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:160259400-160270000	Strong transcription	Stomach Smooth Muscle	stomach
29	chr4:160259400-160270200	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr4:160259400-160270800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr4:160259400-160270800	Strong transcription	HSMM	muscle
32	chr4:160259400-160277600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:160259400-160278600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:160259400-160283000	Strong transcription	Fetal Intestine Large	intestine
35	chr4:160259600-160282800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr4:160260000-160282000	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr4:160260200-160276200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr4:160260400-160268400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr4:160261000-160272000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr4:160261000-160279200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:160261200-160281600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr4:160262000-160269600	Strong transcription	Brain Angular Gyrus	brain
43	chr4:160262200-160268400	Strong transcription	NH-A	brain
44	chr4:160262200-160269800	Strong transcription	Brain Anterior Caudate	brain
45	chr4:160262200-160276000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:160262200-160277200	Weak transcription	Hela-S3	cervix
47	chr4:160262400-160268400	Strong transcription	Rectal Mucosa Donor 31	rectum
48	chr4:160262400-160268400	Strong transcription	K562	blood
49	chr4:160262400-160268400	Strong transcription	NHDF-Ad	bronchial
50	chr4:160262400-160269400	Strong transcription	Fetal Muscle Leg	muscle

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