Variant report

Variant	rs9994151
Chromosome Location	chr4:160175044-160175045
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10010022	1.00[EUR][1000 genomes]
rs10024227	1.00[EUR][1000 genomes]
rs12108274	1.00[EUR][1000 genomes]
rs28450538	1.00[EUR][1000 genomes]
rs28545001	1.00[EUR][1000 genomes]
rs28705976	1.00[EUR][1000 genomes]
rs28716121	1.00[EUR][1000 genomes]
rs28847955	1.00[EUR][1000 genomes]
rs57234842	1.00[EUR][1000 genomes]
rs57640283	1.00[EUR][1000 genomes]
rs57894439	1.00[EUR][1000 genomes]
rs57946912	1.00[EUR][1000 genomes]
rs58730870	1.00[EUR][1000 genomes]
rs59136094	1.00[EUR][1000 genomes]
rs59423717	1.00[EUR][1000 genomes]
rs6820465	1.00[EUR][1000 genomes]
rs9994067	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160149400-160216800	Weak transcription	Small Intestine	intestine
2	chr4:160160600-160179800	Weak transcription	NHEK	skin
3	chr4:160162600-160177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:160164400-160178000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:160166600-160176200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:160167400-160186400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr4:160169800-160175200	Weak transcription	Aorta	Aorta
8	chr4:160169800-160187800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:160170000-160187200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:160170200-160188000	Weak transcription	Fetal Kidney	kidney
11	chr4:160170400-160175600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr4:160170400-160180000	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:160170400-160183200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr4:160170400-160186400	Weak transcription	Fetal Brain Male	brain
15	chr4:160170400-160188000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:160170400-160188400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr4:160170400-160192800	Weak transcription	Primary T cells from cord blood	blood
18	chr4:160170600-160176000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr4:160170600-160180000	Weak transcription	Brain Angular Gyrus	brain
20	chr4:160170600-160183200	Weak transcription	NHDF-Ad	bronchial
21	chr4:160170600-160188000	Weak transcription	Osteobl	bone
22	chr4:160170600-160188200	Weak transcription	Psoas Muscle	Psoas
23	chr4:160171200-160183200	Weak transcription	Brain Anterior Caudate	brain
24	chr4:160171600-160176400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:160172200-160178400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr4:160172400-160175200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:160172600-160175200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr4:160172600-160182800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr4:160172600-160182800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:160172600-160188200	Weak transcription	Pancreas	Pancrea
31	chr4:160172600-160193000	Weak transcription	Gastric	stomach
32	chr4:160172800-160177800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr4:160173000-160177800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr4:160173000-160193200	Weak transcription	Thymus	Thymus
35	chr4:160173200-160179800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:160173200-160183400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr4:160173200-160187800	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr4:160173200-160188200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr4:160173200-160188600	Weak transcription	Lung	lung
40	chr4:160173200-160192400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:160173200-160217400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr4:160173400-160175600	Weak transcription	Fetal Brain Female	brain
43	chr4:160173400-160176000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr4:160173400-160176200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr4:160173400-160177200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr4:160173400-160177800	Weak transcription	Esophagus	oesophagus
47	chr4:160173400-160188000	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr4:160173400-160188000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr4:160173400-160188000	Weak transcription	Fetal Stomach	stomach
50	chr4:160173400-160188000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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