Variant report

Variant	rs57894439
Chromosome Location	chr4:160154984-160154985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10024227	1.00[EUR][1000 genomes]
rs12108274	1.00[EUR][1000 genomes]
rs28545001	1.00[EUR][1000 genomes]
rs28847955	1.00[EUR][1000 genomes]
rs57234842	1.00[EUR][1000 genomes]
rs57640283	1.00[EUR][1000 genomes]
rs57946912	1.00[EUR][1000 genomes]
rs58730870	1.00[EUR][1000 genomes]
rs59136094	1.00[EUR][1000 genomes]
rs59423717	1.00[EUR][1000 genomes]
rs6820465	1.00[EUR][1000 genomes]
rs9994151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016150	chr4:159995816-160165156	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	esv1795614	chr4:160142544-160161916	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160133400-160171600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:160134200-160156600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:160138000-160156000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:160149400-160164000	Weak transcription	K562	blood
5	chr4:160149400-160169600	Weak transcription	Pancreas	Pancrea
6	chr4:160149400-160171800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:160149400-160172000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:160149400-160173000	Weak transcription	Placenta	Placenta
9	chr4:160149400-160216800	Weak transcription	Small Intestine	intestine
10	chr4:160149600-160171800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:160150600-160172000	Weak transcription	Lung	lung
12	chr4:160150800-160156400	Weak transcription	Brain Anterior Caudate	brain
13	chr4:160150800-160156400	Weak transcription	HepG2	liver
14	chr4:160150800-160158200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:160150800-160162200	Weak transcription	NHDF-Ad	bronchial
16	chr4:160150800-160162400	Weak transcription	Brain Angular Gyrus	brain
17	chr4:160150800-160168400	Weak transcription	NH-A	brain
18	chr4:160150800-160172000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:160151200-160159600	Weak transcription	HSMM	muscle
20	chr4:160151200-160160400	Weak transcription	Brain Hippocampus Middle	brain
21	chr4:160151400-160159800	Weak transcription	Brain Substantia Nigra	brain
22	chr4:160151400-160171600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:160151800-160162000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:160152000-160155800	Weak transcription	Left Ventricle	heart
25	chr4:160152000-160156400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr4:160152000-160157000	Weak transcription	Fetal Intestine Small	intestine
27	chr4:160152000-160158200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr4:160152000-160159600	Weak transcription	NHEK	skin
29	chr4:160152000-160162800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr4:160152000-160171800	Weak transcription	Fetal Intestine Large	intestine
31	chr4:160152200-160160400	Weak transcription	Colon Smooth Muscle	Colon
32	chr4:160152200-160169400	Weak transcription	NHLF	lung
33	chr4:160152400-160156400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr4:160152400-160157000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr4:160152400-160157000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr4:160152400-160158200	Weak transcription	Right Atrium	heart
37	chr4:160153200-160156000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:160153400-160155600	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr4:160153800-160155600	Weak transcription	Psoas Muscle	Psoas
40	chr4:160154400-160164600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:160154600-160156600	Weak transcription	Liver	Liver
42	chr4:160154600-160159600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr4:160154600-160159600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr4:160154600-160159800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr4:160154800-160156200	Weak transcription	Fetal Heart	heart
46	chr4:160154800-160156400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr4:160154800-160162200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:160154800-160165800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr4:160154800-160171400	Weak transcription	H1 Cell Line	embryonic stem cell

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