Variant report

Variant	rs6820465
Chromosome Location	chr4:160112296-160112297
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:159642093..159645888-chr4:160111992..160113734,3	MCF-7	breast:
2	chr4:160111455..160113583-chr4:160115797..160118315,2	MCF-7	breast:
3	chr4:160105322..160109162-chr4:160109289..160112648,3	K562	blood:
4	chr4:160063178..160065489-chr4:160110930..160113423,2	K562	blood:
5	chr4:160069886..160071953-chr4:160110910..160113260,2	K562	blood:
6	chr4:160063989..160066747-chr4:160111923..160114649,2	K562	blood:

Variant related genes	Relation type
ENSG00000171497	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10024227	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28545001	1.00[EUR][1000 genomes]
rs28847955	1.00[EUR][1000 genomes]
rs57640283	1.00[EUR][1000 genomes]
rs57894439	1.00[EUR][1000 genomes]
rs57946912	1.00[EUR][1000 genomes]
rs58730870	1.00[EUR][1000 genomes]
rs59136094	1.00[EUR][1000 genomes]
rs59423717	1.00[EUR][1000 genomes]
rs9994151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016150	chr4:159995816-160165156	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160097400-160122400	Weak transcription	Fetal Stomach	stomach
2	chr4:160097400-160136000	Weak transcription	Fetal Intestine Small	intestine
3	chr4:160097400-160143200	Weak transcription	Fetal Intestine Large	intestine
4	chr4:160097600-160115200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:160097600-160116000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:160099600-160129800	Weak transcription	HepG2	liver
7	chr4:160099800-160112600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:160100000-160118600	Weak transcription	Fetal Brain Male	brain
9	chr4:160100000-160118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:160100600-160119000	Weak transcription	Primary T cells from cord blood	blood
11	chr4:160101000-160125600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:160101000-160137200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr4:160101200-160113400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:160101200-160118600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:160101200-160125000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:160101400-160116200	Weak transcription	Fetal Heart	heart
17	chr4:160101400-160118600	Weak transcription	Psoas Muscle	Psoas
18	chr4:160101400-160143400	Weak transcription	Fetal Kidney	kidney
19	chr4:160101600-160113000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:160101600-160113000	Weak transcription	HUVEC	blood vessel
21	chr4:160101800-160118400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr4:160101800-160124000	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr4:160101800-160124800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr4:160101800-160138600	Weak transcription	Aorta	Aorta
25	chr4:160102000-160149000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:160102400-160118600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:160102400-160124000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr4:160103000-160115200	Weak transcription	Right Atrium	heart
29	chr4:160106600-160118400	Weak transcription	Small Intestine	intestine
30	chr4:160106800-160113200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr4:160106800-160118400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr4:160107000-160112400	Weak transcription	NHEK	skin
33	chr4:160107000-160112800	Weak transcription	Osteobl	bone
34	chr4:160107000-160113000	Weak transcription	A549	lung
35	chr4:160107000-160115200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr4:160107000-160118200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:160107000-160125000	Weak transcription	Liver	Liver
38	chr4:160107000-160125600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr4:160107000-160127400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr4:160107000-160132000	Weak transcription	HSMMtube	muscle
41	chr4:160107000-160145600	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr4:160107200-160112600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:160107200-160113000	Weak transcription	Colon Smooth Muscle	Colon
44	chr4:160107200-160113000	Weak transcription	NH-A	brain
45	chr4:160107200-160113000	Weak transcription	NHLF	lung
46	chr4:160107400-160118000	Weak transcription	HMEC	breast
47	chr4:160107600-160113000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:160107600-160113000	Weak transcription	HSMM	muscle
49	chr4:160107800-160113800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr4:160108800-160113200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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