Variant report

Variant	rs59423717
Chromosome Location	chr4:160236997-160236998
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160235103..160237825-chr4:160239636..160242923,3	MCF-7	breast:
2	chr4:160236886..160237734-chr4:160367442..160368310,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10010022	1.00[EUR][1000 genomes]
rs10024227	1.00[EUR][1000 genomes]
rs12108274	1.00[EUR][1000 genomes]
rs28450538	1.00[EUR][1000 genomes]
rs28545001	1.00[EUR][1000 genomes]
rs28705976	1.00[EUR][1000 genomes]
rs28716121	1.00[EUR][1000 genomes]
rs28847955	1.00[EUR][1000 genomes]
rs57234842	1.00[EUR][1000 genomes]
rs57640283	1.00[EUR][1000 genomes]
rs57894439	1.00[EUR][1000 genomes]
rs57946912	1.00[EUR][1000 genomes]
rs58730870	1.00[EUR][1000 genomes]
rs59136094	1.00[EUR][1000 genomes]
rs6820465	1.00[EUR][1000 genomes]
rs9994151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160193400-160240200	Weak transcription	Gastric	stomach
2	chr4:160205800-160260600	Weak transcription	Aorta	Aorta
3	chr4:160210600-160238000	Weak transcription	Adipose Nuclei	Adipose
4	chr4:160216600-160237600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr4:160217000-160259400	Weak transcription	Fetal Brain Male	brain
6	chr4:160220000-160244400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:160223000-160260000	Weak transcription	Ovary	ovary
8	chr4:160224600-160262400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr4:160225200-160260200	Weak transcription	Thymus	Thymus
10	chr4:160225600-160253600	Weak transcription	HepG2	liver
11	chr4:160226000-160260800	Weak transcription	Colonic Mucosa	Colon
12	chr4:160226200-160244000	Weak transcription	Fetal Kidney	kidney
13	chr4:160226200-160270600	Weak transcription	Small Intestine	intestine
14	chr4:160226400-160242400	Weak transcription	GM12878-XiMat	blood
15	chr4:160226600-160237600	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr4:160229000-160242600	Weak transcription	Right Atrium	heart
17	chr4:160229200-160247600	Weak transcription	Stomach Mucosa	stomach
18	chr4:160230000-160251800	Weak transcription	NHDF-Ad	bronchial
19	chr4:160230200-160239200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:160230200-160263800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:160230200-160270800	Weak transcription	A549	lung
22	chr4:160230400-160237400	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr4:160230400-160238400	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:160230400-160243400	Weak transcription	NH-A	brain
25	chr4:160230400-160244000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr4:160230400-160253600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:160230400-160259400	Weak transcription	NHLF	lung
28	chr4:160230400-160260200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:160230400-160260600	Weak transcription	HSMMtube	muscle
30	chr4:160230600-160238000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr4:160230600-160260000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr4:160230800-160238000	Weak transcription	HSMM	muscle
33	chr4:160231000-160238000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr4:160231000-160240000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr4:160231000-160243400	Weak transcription	NHEK	skin
36	chr4:160231000-160243600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr4:160231000-160244000	Weak transcription	HUVEC	blood vessel
38	chr4:160231000-160259400	Weak transcription	HMEC	breast
39	chr4:160231000-160260400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr4:160231000-160260400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr4:160232200-160274600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr4:160232800-160240200	Weak transcription	Right Ventricle	heart
43	chr4:160232800-160253400	Weak transcription	Psoas Muscle	Psoas
44	chr4:160233000-160244200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr4:160233000-160253400	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr4:160233000-160260000	Weak transcription	Colon Smooth Muscle	Colon
47	chr4:160233600-160243600	Weak transcription	Dnd41	blood
48	chr4:160233600-160244000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr4:160233600-160259600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr4:160233800-160238000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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