Variant report

Variant	rs57640283
Chromosome Location	chr4:160287938-160287939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:160280140..160282887-chr4:160286414..160288153,2	K562	blood:
2	chr4:160283609..160286187-chr4:160286317..160288730,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10010022	1.00[EUR][1000 genomes]
rs10024227	1.00[EUR][1000 genomes]
rs12108274	1.00[EUR][1000 genomes]
rs28450538	1.00[EUR][1000 genomes]
rs28545001	1.00[EUR][1000 genomes]
rs28705976	1.00[EUR][1000 genomes]
rs28716121	1.00[EUR][1000 genomes]
rs28847955	1.00[EUR][1000 genomes]
rs57234842	1.00[EUR][1000 genomes]
rs57894439	1.00[EUR][1000 genomes]
rs57946912	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58730870	1.00[EUR][1000 genomes]
rs59136094	1.00[EUR][1000 genomes]
rs59423717	1.00[EUR][1000 genomes]
rs6820465	1.00[EUR][1000 genomes]
rs9994151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160274200-160289800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:160275200-160303800	Weak transcription	Right Atrium	heart
3	chr4:160275400-160288000	Weak transcription	A549	lung
4	chr4:160280200-160289800	Weak transcription	Spleen	Spleen
5	chr4:160280200-160290800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:160280200-160295200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:160280600-160288000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:160280600-160288200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:160280600-160290200	Weak transcription	Pancreas	Pancrea
10	chr4:160280800-160288000	Weak transcription	Left Ventricle	heart
11	chr4:160280800-160288200	Weak transcription	Fetal Thymus	thymus
12	chr4:160280800-160288200	Weak transcription	HSMMtube	muscle
13	chr4:160280800-160289600	Weak transcription	Lung	lung
14	chr4:160281200-160288000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr4:160281200-160288000	Weak transcription	Brain Anterior Caudate	brain
16	chr4:160281200-160288000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr4:160281200-160288200	Weak transcription	GM12878-XiMat	blood
18	chr4:160281200-160292000	Weak transcription	Brain Germinal Matrix	brain
19	chr4:160282000-160288000	Weak transcription	Fetal Lung	lung
20	chr4:160282000-160288400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr4:160282200-160288200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:160282200-160288400	Weak transcription	Primary B cells from cord blood	blood
23	chr4:160282200-160291200	Weak transcription	Aorta	Aorta
24	chr4:160282400-160288000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:160282400-160288000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr4:160282400-160288000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr4:160282400-160288600	Weak transcription	Fetal Heart	heart
28	chr4:160282400-160288800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:160282600-160288000	Weak transcription	HMEC	breast
30	chr4:160282600-160288000	Weak transcription	NH-A	brain
31	chr4:160282600-160288200	Weak transcription	NHLF	lung
32	chr4:160282600-160288200	Weak transcription	Osteobl	bone
33	chr4:160282800-160288000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr4:160282800-160288000	Weak transcription	Placenta	Placenta
35	chr4:160282800-160288200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:160282800-160288200	Weak transcription	Fetal Muscle Leg	muscle
37	chr4:160282800-160291000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:160283000-160288000	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr4:160283000-160288200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr4:160283000-160288200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr4:160283000-160288200	Weak transcription	NHDF-Ad	bronchial
42	chr4:160283200-160288000	Weak transcription	HSMM	muscle
43	chr4:160283600-160288600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr4:160284800-160288200	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr4:160284800-160290600	Weak transcription	Fetal Stomach	stomach
46	chr4:160285800-160288000	Weak transcription	HUVEC	blood vessel
47	chr4:160287000-160288000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:160287400-160289200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:160287600-160288000	Enhancers	NHEK	skin
50	chr4:160287600-160289000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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