Variant report

Variant	rs57946912
Chromosome Location	chr4:160301578-160301579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10010022	1.00[EUR][1000 genomes]
rs10024227	1.00[EUR][1000 genomes]
rs12108274	1.00[EUR][1000 genomes]
rs28450538	1.00[EUR][1000 genomes]
rs28545001	1.00[EUR][1000 genomes]
rs28705976	1.00[EUR][1000 genomes]
rs28716121	1.00[EUR][1000 genomes]
rs28847955	1.00[EUR][1000 genomes]
rs57234842	1.00[EUR][1000 genomes]
rs57640283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57894439	1.00[EUR][1000 genomes]
rs58730870	1.00[EUR][1000 genomes]
rs59136094	1.00[EUR][1000 genomes]
rs59423717	1.00[EUR][1000 genomes]
rs6820465	1.00[EUR][1000 genomes]
rs9994151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160275200-160303800	Weak transcription	Right Atrium	heart
2	chr4:160301000-160301600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:160301400-160303800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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