Variant report

Variant	rs28847955
Chromosome Location	chr4:160119378-160119379
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10024227	1.00[EUR][1000 genomes]
rs28545001	1.00[EUR][1000 genomes]
rs57640283	1.00[EUR][1000 genomes]
rs57894439	1.00[EUR][1000 genomes]
rs57946912	1.00[EUR][1000 genomes]
rs58730870	1.00[EUR][1000 genomes]
rs59136094	1.00[EUR][1000 genomes]
rs59423717	1.00[EUR][1000 genomes]
rs6820465	1.00[EUR][1000 genomes]
rs9994151	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016150	chr4:159995816-160165156	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160097400-160122400	Weak transcription	Fetal Stomach	stomach
2	chr4:160097400-160136000	Weak transcription	Fetal Intestine Small	intestine
3	chr4:160097400-160143200	Weak transcription	Fetal Intestine Large	intestine
4	chr4:160099600-160129800	Weak transcription	HepG2	liver
5	chr4:160101000-160125600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:160101000-160137200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:160101200-160125000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:160101400-160143400	Weak transcription	Fetal Kidney	kidney
9	chr4:160101800-160124000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr4:160101800-160124800	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr4:160101800-160138600	Weak transcription	Aorta	Aorta
12	chr4:160102000-160149000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:160102400-160124000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:160107000-160125000	Weak transcription	Liver	Liver
15	chr4:160107000-160125600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr4:160107000-160127400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:160107000-160132000	Weak transcription	HSMMtube	muscle
18	chr4:160107000-160145600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:160110000-160134000	Weak transcription	Fetal Brain Female	brain
20	chr4:160111400-160134000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:160111800-160134800	Weak transcription	Placenta	Placenta
22	chr4:160112800-160132200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:160113200-160120800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr4:160113200-160124000	Weak transcription	NHEK	skin
25	chr4:160113200-160126600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:160113200-160127400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:160113200-160142400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr4:160113400-160127000	Weak transcription	Primary B cells from cord blood	blood
29	chr4:160113400-160134400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr4:160113600-160122800	Weak transcription	Colon Smooth Muscle	Colon
31	chr4:160114000-160119800	Weak transcription	NHDF-Ad	bronchial
32	chr4:160114400-160123200	Weak transcription	GM12878-XiMat	blood
33	chr4:160114400-160125400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr4:160114600-160122400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:160114800-160122200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr4:160114800-160126800	Weak transcription	Pancreas	Pancrea
37	chr4:160115000-160127400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr4:160115400-160125000	Weak transcription	HUVEC	blood vessel
39	chr4:160115400-160129400	Weak transcription	Spleen	Spleen
40	chr4:160115600-160149200	Weak transcription	Esophagus	oesophagus
41	chr4:160115800-160120600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr4:160115800-160127400	Weak transcription	NH-A	brain
43	chr4:160116600-160127400	Weak transcription	HSMM	muscle
44	chr4:160116600-160145200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr4:160116800-160127400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr4:160116800-160131800	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr4:160116800-160148200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:160117000-160122800	Weak transcription	Left Ventricle	heart
49	chr4:160117000-160129200	Weak transcription	Right Ventricle	heart
50	chr4:160117000-160138400	Weak transcription	Gastric	stomach

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