Variant report

Variant	rs61498926
Chromosome Location	chr4:160304668-160304669
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10013961	1.00[ASN][1000 genomes]
rs10034409	1.00[EUR][1000 genomes]
rs11946474	1.00[EUR][1000 genomes]
rs2464794	1.00[EUR][1000 genomes]
rs28462119	1.00[ASN][1000 genomes]
rs28545001	1.00[ASN][1000 genomes]
rs28755457	1.00[EUR][1000 genomes]
rs28883584	1.00[EUR][1000 genomes]
rs2952610	1.00[EUR][1000 genomes]
rs57147050	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57299850	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57659423	1.00[EUR][1000 genomes]
rs57696778	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60646338	1.00[EUR][1000 genomes]
rs72965979	1.00[EUR][1000 genomes]
rs72967707	1.00[EUR][1000 genomes]
rs72967709	1.00[EUR][1000 genomes]
rs72967714	1.00[EUR][1000 genomes]
rs72967717	1.00[EUR][1000 genomes]
rs72967780	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72967798	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664778	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7679267	1.00[EUR][1000 genomes]
rs7691182	1.00[EUR][1000 genomes]
rs9631759	1.00[ASN][1000 genomes]
rs9685433	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022771	chr4:160188801-160324683	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160303400-160305200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:160303600-160305800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr4:160303800-160305000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:160303800-160305000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr4:160303800-160305000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:160303800-160305200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:160303800-160305200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:160303800-160306200	Enhancers	Fetal Heart	heart
9	chr4:160303800-160321600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:160304000-160305000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:160304200-160304800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr4:160304200-160304800	Enhancers	Fetal Lung	lung
13	chr4:160304200-160305200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:160304200-160305200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr4:160304200-160305200	Enhancers	HUVEC	blood vessel
16	chr4:160304200-160305800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:160304200-160307000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr4:160304400-160304800	Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr4:160304400-160305200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
20	chr4:160304400-160305200	Enhancers	Small Intestine	intestine
21	chr4:160304400-160305400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr4:160304400-160305800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:160304400-160306400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:160304600-160305000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr4:160304600-160305400	Active TSS	HUES48 Cell Line	embryonic stem cell

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