Variant report

Variant	rs10021757
Chromosome Location	chr4:141955144-141955145
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10022004	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735069	1.00[EUR][1000 genomes]
rs11931760	1.00[EUR][1000 genomes]
rs1364883	1.00[EUR][1000 genomes]
rs1425434	1.00[EUR][1000 genomes]
rs28594770	1.00[EUR][1000 genomes]
rs3919607	1.00[EUR][1000 genomes]
rs4055826	1.00[EUR][1000 genomes]
rs4956495	1.00[EUR][1000 genomes]
rs6829045	1.00[EUR][1000 genomes]
rs72949017	1.00[EUR][1000 genomes]
rs7671053	1.00[EUR][1000 genomes]
rs7676279	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141929200-141955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:141948400-141956400	Weak transcription	Left Ventricle	heart
3	chr4:141950200-141958000	Weak transcription	Osteobl	bone
4	chr4:141950800-141956200	Weak transcription	Fetal Heart	heart
5	chr4:141950800-141956400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:141951000-141956400	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:141953800-141962400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:141954800-141955400	ZNF genes & repeats	Psoas Muscle	Psoas
9	chr4:141955000-141955200	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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