Variant report

Variant	rs1364883
Chromosome Location	chr4:141906235-141906236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10021757	1.00[EUR][1000 genomes]
rs10022004	1.00[EUR][1000 genomes]
rs10857388	1.00[AMR][1000 genomes]
rs11735069	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11931760	1.00[EUR][1000 genomes]
rs1364888	1.00[AMR][1000 genomes]
rs1364889	1.00[AMR][1000 genomes]
rs1395666	1.00[AMR][1000 genomes]
rs1425429	0.92[YRI][hapmap]
rs1425434	0.88[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1895757	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28594770	1.00[EUR][1000 genomes]
rs3851426	1.00[AMR][1000 genomes]
rs3919607	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4055826	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4351091	1.00[AMR][1000 genomes]
rs4956495	0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6829045	0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72949017	1.00[EUR][1000 genomes]
rs7671053	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7676279	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141877800-141913600	Weak transcription	Right Ventricle	heart
2	chr4:141888200-141913400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:141897800-141910200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:141902600-141908000	Enhancers	Fetal Heart	heart
5	chr4:141903400-141906600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr4:141905400-141908200	Enhancers	Colon Smooth Muscle	Colon
7	chr4:141905600-141907000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr4:141905600-141907400	Enhancers	Fetal Kidney	kidney
9	chr4:141905600-141908000	Enhancers	Rectal Smooth Muscle	rectum
10	chr4:141905600-141908000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr4:141905800-141906400	Enhancers	Ovary	ovary
12	chr4:141905800-141906600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:141905800-141906600	Enhancers	Adipose Nuclei	Adipose
14	chr4:141905800-141906600	Enhancers	Brain Anterior Caudate	brain
15	chr4:141905800-141906600	Enhancers	Brain Hippocampus Middle	brain
16	chr4:141905800-141906600	Enhancers	Fetal Lung	lung
17	chr4:141905800-141907200	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr4:141905800-141907600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:141905800-141907600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:141906000-141907600	Weak transcription	Right Atrium	heart
21	chr4:141906000-141910200	Weak transcription	Left Ventricle	heart
22	chr4:141906000-141914600	Weak transcription	Fetal Muscle Leg	muscle
23	chr4:141906200-141907200	Weak transcription	Psoas Muscle	Psoas
24	chr4:141906200-141910600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:141906200-141913600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links