Variant report

Variant	rs4351091
Chromosome Location	chr4:141913989-141913990
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10857388	0.87[LWK][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]
rs11735069	1.00[AMR][1000 genomes]
rs1364883	1.00[AMR][1000 genomes]
rs1364888	1.00[AMR][1000 genomes]
rs1364889	1.00[AMR][1000 genomes]
rs1395666	0.94[LWK][hapmap];0.93[MKK][hapmap];1.00[AMR][1000 genomes]
rs1425434	1.00[AMR][1000 genomes]
rs1895757	1.00[AMR][1000 genomes]
rs3851426	0.90[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3919607	1.00[AMR][1000 genomes]
rs4055826	1.00[AMR][1000 genomes]
rs4956495	1.00[AMR][1000 genomes]
rs6829045	1.00[AMR][1000 genomes]
rs7671053	1.00[AMR][1000 genomes]
rs7676279	1.00[AMR][1000 genomes]
rs7684405	0.80[ASW][hapmap];0.84[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141906000-141914600	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:141908000-141915400	Weak transcription	Psoas Muscle	Psoas
3	chr4:141908200-141914000	Weak transcription	Colon Smooth Muscle	Colon
4	chr4:141910600-141919600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:141911000-141923600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:141911400-141914400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:141911400-141914600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:141911800-141915000	Weak transcription	Aorta	Aorta
9	chr4:141911800-141915800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr4:141911800-141916200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:141912600-141915000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:141913400-141914000	Strong transcription	Fetal Muscle Trunk	muscle
13	chr4:141913600-141914200	Strong transcription	Fetal Stomach	stomach
14	chr4:141913600-141914400	Genic enhancers	Left Ventricle	heart
15	chr4:141913600-141914800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:141913600-141915200	Enhancers	Fetal Heart	heart
17	chr4:141913600-141916600	Enhancers	Spleen	Spleen
18	chr4:141913600-141916800	Enhancers	Ovary	ovary
19	chr4:141913800-141914000	Enhancers	Pancreas	Pancrea
20	chr4:141913800-141915200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:141913800-141915400	Enhancers	Right Atrium	heart
22	chr4:141913800-141919400	Weak transcription	Right Ventricle	heart

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