Variant report

Variant	rs7684405
Chromosome Location	chr4:141924588-141924589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10030949	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11726866	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13123111	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2321691	0.86[AFR][1000 genomes]
rs3851426	0.83[LWK][hapmap];0.86[YRI][hapmap]
rs4351091	0.80[ASW][hapmap];0.84[LWK][hapmap]
rs4956339	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs987302	0.81[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141920000-141924600	Weak transcription	Psoas Muscle	Psoas
2	chr4:141920200-141933200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:141920400-141937800	Weak transcription	Right Ventricle	heart
4	chr4:141923200-141924600	Enhancers	Osteobl	bone
5	chr4:141923200-141925400	Enhancers	Rectal Smooth Muscle	rectum
6	chr4:141923400-141924600	Enhancers	Adipose Nuclei	Adipose
7	chr4:141923400-141924800	Enhancers	Fetal Lung	lung
8	chr4:141923400-141924800	Enhancers	Ovary	ovary
9	chr4:141923400-141925200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:141923400-141925400	Enhancers	Colon Smooth Muscle	Colon
11	chr4:141923600-141924600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr4:141923600-141924600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr4:141923600-141924800	Enhancers	Fetal Stomach	stomach
14	chr4:141923800-141924600	Enhancers	Fetal Muscle Leg	muscle
15	chr4:141923800-141925200	Enhancers	Aorta	Aorta
16	chr4:141924000-141925000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:141924000-141925200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr4:141924200-141925600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr4:141924200-141925800	Enhancers	Stomach Smooth Muscle	stomach
20	chr4:141924200-141927400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr4:141924200-141932400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:141924400-141924600	Enhancers	Pancreatic Islets	Pancreatic Islet
23	chr4:141924400-141924800	Enhancers	Fetal Brain Male	brain
24	chr4:141924400-141924800	Enhancers	Left Ventricle	heart
25	chr4:141924400-141925200	Enhancers	Right Atrium	heart
26	chr4:141924400-141929000	Enhancers	Fetal Heart	heart

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