Variant report

Variant	rs11726866
Chromosome Location	chr4:141922821-141922822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10030949	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13123111	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2321691	0.88[AFR][1000 genomes]
rs4956339	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684405	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs987302	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141911000-141923600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr4:141917200-141923400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:141917800-141923400	Weak transcription	Adipose Nuclei	Adipose
4	chr4:141918200-141923400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:141918200-141923400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:141918200-141923400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:141918400-141923200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:141918400-141923400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:141918600-141923200	Weak transcription	Osteobl	bone
10	chr4:141919600-141923600	Enhancers	Fetal Heart	heart
11	chr4:141920000-141923600	Weak transcription	Fetal Stomach	stomach
12	chr4:141920000-141923800	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:141920000-141924400	Weak transcription	Left Ventricle	heart
14	chr4:141920000-141924400	Weak transcription	Right Atrium	heart
15	chr4:141920000-141924600	Weak transcription	Psoas Muscle	Psoas
16	chr4:141920200-141923400	Weak transcription	Ovary	ovary
17	chr4:141920200-141923600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:141920200-141933200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr4:141920400-141937800	Weak transcription	Right Ventricle	heart
20	chr4:141920600-141923200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr4:141920600-141923400	Weak transcription	Fetal Lung	lung
22	chr4:141920600-141923600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:141920600-141923800	Weak transcription	Aorta	Aorta
24	chr4:141920800-141923600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:141922200-141923400	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:141922200-141923600	Weak transcription	Stomach Smooth Muscle	stomach

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