Variant report

Variant	rs1364889
Chromosome Location	chr4:141943479-141943480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:141942691..141944577-chr4:141956813..141958772,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10857388	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11735069	1.00[AMR][1000 genomes]
rs1364883	1.00[AMR][1000 genomes]
rs1364888	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1395666	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1425434	1.00[AMR][1000 genomes]
rs1895757	1.00[AMR][1000 genomes]
rs3851426	1.00[AMR][1000 genomes]
rs3919607	1.00[AMR][1000 genomes]
rs4055826	1.00[AMR][1000 genomes]
rs4351091	1.00[AMR][1000 genomes]
rs4956495	1.00[AMR][1000 genomes]
rs6829045	1.00[AMR][1000 genomes]
rs7671053	1.00[AMR][1000 genomes]
rs7676279	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141929200-141955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:141937200-141944000	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:141940600-141943800	Enhancers	Fetal Stomach	stomach
4	chr4:141940800-141943600	Enhancers	Fetal Kidney	kidney
5	chr4:141940800-141944000	Enhancers	Fetal Lung	lung
6	chr4:141941000-141943800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr4:141941000-141943800	Enhancers	Fetal Brain Female	brain
8	chr4:141941400-141943600	Enhancers	NHDF-Ad	bronchial
9	chr4:141941400-141943800	Enhancers	Adipose Nuclei	Adipose
10	chr4:141941400-141943800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr4:141941400-141943800	Enhancers	Fetal Muscle Leg	muscle
12	chr4:141941400-141943800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr4:141941400-141943800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:141942000-141944000	Enhancers	Colon Smooth Muscle	Colon
15	chr4:141942200-141944000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:141942400-141943600	Enhancers	Stomach Smooth Muscle	stomach
17	chr4:141942600-141943600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:141942800-141948600	Weak transcription	Osteobl	bone
19	chr4:141943000-141948800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:141943200-141944200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:141943200-141944600	Enhancers	Fetal Brain Male	brain
22	chr4:141943200-141945800	Enhancers	Fetal Heart	heart
23	chr4:141943200-141948000	Weak transcription	Left Ventricle	heart
24	chr4:141943200-141948200	Weak transcription	Psoas Muscle	Psoas
25	chr4:141943200-141949200	Weak transcription	Ovary	ovary
26	chr4:141943400-141948200	Weak transcription	NHLF	lung
27	chr4:141943400-141948400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:141943400-141948600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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