Variant report

Variant	rs10857388
Chromosome Location	chr4:141941522-141941523
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11735069	1.00[AMR][1000 genomes]
rs1364883	1.00[AMR][1000 genomes]
rs1364888	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1364889	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1395666	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1425434	1.00[AMR][1000 genomes]
rs1895757	1.00[AMR][1000 genomes]
rs3851426	0.87[LWK][hapmap];0.83[MKK][hapmap];1.00[AMR][1000 genomes]
rs3919607	1.00[AMR][1000 genomes]
rs4055826	1.00[AMR][1000 genomes]
rs4351091	0.87[LWK][hapmap];0.91[MKK][hapmap];1.00[AMR][1000 genomes]
rs4956495	1.00[AMR][1000 genomes]
rs6829045	1.00[AMR][1000 genomes]
rs7671053	1.00[AMR][1000 genomes]
rs7676279	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141925200-141942200	Weak transcription	Aorta	Aorta
2	chr4:141929200-141955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:141937200-141944000	Enhancers	Rectal Smooth Muscle	rectum
4	chr4:141937600-141942800	Weak transcription	Right Atrium	heart
5	chr4:141938200-141942800	Weak transcription	Right Ventricle	heart
6	chr4:141938800-141941600	Weak transcription	NHLF	lung
7	chr4:141939400-141942600	Enhancers	Fetal Brain Male	brain
8	chr4:141939600-141942000	Enhancers	Stomach Smooth Muscle	stomach
9	chr4:141940600-141942000	Flanking Active TSS	Colon Smooth Muscle	Colon
10	chr4:141940600-141943800	Enhancers	Fetal Stomach	stomach
11	chr4:141940800-141943600	Enhancers	Fetal Kidney	kidney
12	chr4:141940800-141944000	Enhancers	Fetal Lung	lung
13	chr4:141941000-141943800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr4:141941000-141943800	Enhancers	Fetal Brain Female	brain
15	chr4:141941200-141942000	Enhancers	Brain Hippocampus Middle	brain
16	chr4:141941400-141942600	Flanking Active TSS	Fetal Heart	heart
17	chr4:141941400-141942800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:141941400-141942800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:141941400-141943000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:141941400-141943200	Enhancers	Left Ventricle	heart
21	chr4:141941400-141943200	Enhancers	Ovary	ovary
22	chr4:141941400-141943200	Enhancers	Psoas Muscle	Psoas
23	chr4:141941400-141943400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr4:141941400-141943600	Enhancers	NHDF-Ad	bronchial
25	chr4:141941400-141943800	Enhancers	Adipose Nuclei	Adipose
26	chr4:141941400-141943800	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr4:141941400-141943800	Enhancers	Fetal Muscle Leg	muscle
28	chr4:141941400-141943800	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr4:141941400-141943800	Enhancers	Skeletal Muscle Female	skeletal muscle

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