Variant report

Variant	rs1425429
Chromosome Location	chr4:141891223-141891224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10021757	1.00[EUR][1000 genomes]
rs10022004	1.00[EUR][1000 genomes]
rs10857388	1.00[AMR][1000 genomes]
rs11735069	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11931760	1.00[EUR][1000 genomes]
rs1364883	0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1364888	1.00[AMR][1000 genomes]
rs1364889	1.00[AMR][1000 genomes]
rs1395666	1.00[AMR][1000 genomes]
rs1425434	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1895757	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28594770	1.00[EUR][1000 genomes]
rs3851426	1.00[AMR][1000 genomes]
rs3919607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4055826	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4351091	1.00[AMR][1000 genomes]
rs4956495	0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6829045	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72949017	1.00[EUR][1000 genomes]
rs7671053	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7676279	0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830090	chr4:141770494-141947764	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv830091	chr4:141796603-141980546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv880168	chr4:141826780-141900370	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:141876800-141905600	Weak transcription	Fetal Kidney	kidney
2	chr4:141877000-141892600	Weak transcription	Adipose Nuclei	Adipose
3	chr4:141877600-141905800	Weak transcription	Fetal Lung	lung
4	chr4:141877800-141913600	Weak transcription	Right Ventricle	heart
5	chr4:141880200-141891800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:141881000-141900800	Weak transcription	Left Ventricle	heart
7	chr4:141881600-141891800	Weak transcription	Fetal Heart	heart
8	chr4:141883400-141892000	Weak transcription	Fetal Brain Male	brain
9	chr4:141886600-141892600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:141886800-141892400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr4:141887600-141891800	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:141888200-141913400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr4:141888400-141897400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:141889400-141903400	Weak transcription	Ovary	ovary
15	chr4:141889600-141892200	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:141889600-141892800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:141890200-141891400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:141890800-141891600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:141890800-141892000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr4:141890800-141892400	Weak transcription	Fetal Stomach	stomach
21	chr4:141891000-141892800	Enhancers	Psoas Muscle	Psoas
22	chr4:141891200-141892000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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