Variant report

Variant	rs10022825
Chromosome Location	chr4:87878040-87878041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:87875765..87890159-chr4:87922878..87933002,25	K562	blood:
2	chr4:87872106..87875021-chr4:87875447..87878052,2	K562	blood:
3	chr4:87876506..87878557-chr4:87886269..87888945,2	K562	blood:
4	chr4:87877779..87879941-chr4:87884017..87885915,2	K562	blood:
5	chr4:87860517..87862879-chr4:87877524..87879606,2	K562	blood:
6	chr4:87865631..87867433-chr4:87876659..87878502,2	K562	blood:
7	chr4:87860293..87862516-chr4:87877340..87879546,2	MCF-7	breast:
8	chr4:87877638..87879941-chr4:87882578..87885517,2	K562	blood:
9	chr4:87876640..87879559-chr4:87894378..87897359,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000172493	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10003331	1.00[ASN][1000 genomes]
rs10015544	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10032200	1.00[ASN][1000 genomes]
rs10050309	1.00[ASN][1000 genomes]
rs1037813	1.00[ASN][1000 genomes]
rs12508231	1.00[ASN][1000 genomes]
rs13103234	1.00[ASN][1000 genomes]
rs13108043	1.00[ASN][1000 genomes]
rs13134084	1.00[ASN][1000 genomes]
rs17012304	1.00[ASN][1000 genomes]
rs17030453	1.00[ASN][1000 genomes]
rs17604937	1.00[ASN][1000 genomes]
rs17668731	1.00[ASN][1000 genomes]
rs17668952	1.00[ASN][1000 genomes]
rs17703261	1.00[ASN][1000 genomes]
rs2230858	1.00[ASN][1000 genomes]
rs28495374	1.00[ASN][1000 genomes]
rs28667805	1.00[ASN][1000 genomes]
rs28791499	1.00[ASN][1000 genomes]
rs35658582	1.00[ASN][1000 genomes]
rs366327	1.00[ASN][1000 genomes]
rs56656813	1.00[ASN][1000 genomes]
rs58478399	1.00[ASN][1000 genomes]
rs62305596	1.00[ASN][1000 genomes]
rs62306540	1.00[ASN][1000 genomes]
rs71607404	1.00[ASN][1000 genomes]
rs72877916	1.00[ASN][1000 genomes]
rs72877918	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1009937	chr4:87795314-88008345	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv999176	chr4:87869996-88098136	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv998335	chr4:87869996-88104414	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1001017	chr4:87872160-88087003	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv537166	chr4:87872160-88087003	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87857600-87882000	Weak transcription	Spleen	Spleen
2	chr4:87857800-87880200	Weak transcription	HSMM	muscle
3	chr4:87858600-87881000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:87861400-87880800	Weak transcription	Aorta	Aorta
5	chr4:87861800-87880000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:87861800-87880600	Weak transcription	Fetal Kidney	kidney
7	chr4:87864400-87880600	Weak transcription	Gastric	stomach
8	chr4:87864400-87880800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:87868200-87880600	Weak transcription	Lung	lung
10	chr4:87868200-87881200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:87868400-87878200	Weak transcription	Primary B cells from cord blood	blood
12	chr4:87868400-87880000	Weak transcription	Thymus	Thymus
13	chr4:87868400-87880800	Weak transcription	Pancreas	Pancrea
14	chr4:87868400-87881400	Weak transcription	Colonic Mucosa	Colon
15	chr4:87868400-87891800	Weak transcription	Esophagus	oesophagus
16	chr4:87868600-87878400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr4:87868600-87886800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr4:87868600-87898000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:87869000-87880800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:87869200-87878200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr4:87869400-87881800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr4:87869600-87881200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr4:87869600-87882000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:87869600-87886200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:87869800-87880600	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr4:87869800-87880800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr4:87869800-87880800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:87869800-87888000	Weak transcription	HUVEC	blood vessel
29	chr4:87869800-87894000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr4:87870200-87879600	Weak transcription	Stomach Mucosa	stomach
31	chr4:87870200-87880600	Weak transcription	Brain Substantia Nigra	brain
32	chr4:87870200-87880800	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:87871600-87878600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr4:87871600-87881800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr4:87872000-87880800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr4:87872000-87881800	Weak transcription	Ovary	ovary
37	chr4:87872200-87878200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:87872200-87879600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr4:87872400-87880000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr4:87872400-87880800	Weak transcription	Left Ventricle	heart
41	chr4:87872400-87880800	Weak transcription	Right Ventricle	heart
42	chr4:87872400-87882000	Weak transcription	Primary T cells from cord blood	blood
43	chr4:87872600-87878200	Weak transcription	NHDF-Ad	bronchial
44	chr4:87872600-87878400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:87872600-87879600	Weak transcription	Primary B cells from peripheral blood	blood
46	chr4:87872600-87880000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr4:87872600-87880000	Weak transcription	Fetal Intestine Small	intestine
48	chr4:87872600-87880200	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr4:87872600-87880800	Weak transcription	Psoas Muscle	Psoas
50	chr4:87872600-87881200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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