Variant report

Variant	rs10022879
Chromosome Location	chr4:106671992-106671993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10028995	1.00[AMR][1000 genomes]
rs10034948	1.00[AMR][1000 genomes]
rs1374533	1.00[AMR][1000 genomes]
rs17036069	1.00[AMR][1000 genomes]
rs28522828	1.00[AMR][1000 genomes]
rs28585686	1.00[AMR][1000 genomes]
rs28602238	1.00[AMR][1000 genomes]
rs28604956	1.00[AMR][1000 genomes]
rs28822077	1.00[AMR][1000 genomes]
rs35284621	1.00[AMR][1000 genomes]
rs61736387	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6857305	1.00[MEX][hapmap]
rs73837036	1.00[AMR][1000 genomes]
rs9994835	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv879700	chr4:106643445-106745057	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1000947	chr4:106651153-106701679	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106634000-106693200	Weak transcription	K562	blood
2	chr4:106659400-106679400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:106659400-106686400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:106659600-106691800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:106661400-106676200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:106661400-106686600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:106661400-106686600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:106661600-106696800	Weak transcription	Fetal Intestine Small	intestine
9	chr4:106661800-106675800	Weak transcription	Primary B cells from cord blood	blood
10	chr4:106663800-106688600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr4:106666600-106673000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr4:106668400-106673000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:106668600-106679800	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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