Variant report

Variant	rs28602238
Chromosome Location	chr4:106581611-106581612
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10022879	1.00[AMR][1000 genomes]
rs10028995	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1374533	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17036069	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28522828	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28585686	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28604956	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28822077	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35284621	1.00[AMR][1000 genomes]
rs61736387	1.00[AMR][1000 genomes]
rs73837036	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv3467298	chr4:106577722-106583287	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3467299	chr4:106577722-106583287	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv14749	chr4:106577867-106583120	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106559400-106602800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:106569800-106600400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:106574400-106585400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:106578200-106588200	Weak transcription	Pancreas	Pancrea
5	chr4:106578600-106607000	Weak transcription	Small Intestine	intestine
6	chr4:106580400-106603400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:106580400-106613200	Weak transcription	Fetal Intestine Small	intestine
8	chr4:106580600-106588600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr4:106580600-106593800	Weak transcription	Gastric	stomach
10	chr4:106581400-106588200	Weak transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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