Variant report

Variant	rs1002326
Chromosome Location	chr1:168944348-168944349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10489368	0.82[EUR][1000 genomes]
rs11590068	0.86[EUR][1000 genomes]
rs1575330	0.82[EUR][1000 genomes]
rs16861785	0.82[EUR][1000 genomes]
rs61302106	0.82[EUR][1000 genomes]
rs61562132	0.86[EUR][1000 genomes]
rs73043982	0.86[EUR][1000 genomes]
rs992325	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168941000-168945800	Weak transcription	Brain Angular Gyrus	brain
2	chr1:168941000-168946800	Weak transcription	Brain Hippocampus Middle	brain
3	chr1:168941000-168947000	Weak transcription	Brain Anterior Caudate	brain
4	chr1:168941200-168949200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr1:168942400-168946800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:168942400-168947000	Weak transcription	Brain Substantia Nigra	brain
7	chr1:168942600-168945200	Weak transcription	Fetal Lung	lung
8	chr1:168943000-168945800	Weak transcription	Small Intestine	intestine
9	chr1:168943800-168949200	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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