Variant report

Variant	rs61562132
Chromosome Location	chr1:168929536-168929537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1002326	0.86[EUR][1000 genomes]
rs10489368	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11584025	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11590068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12037139	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12040207	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1575330	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16861785	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3950026	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57748075	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs59728189	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs60220949	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61302106	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73043982	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992325	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168926800-168931000	Enhancers	Brain Germinal Matrix	brain
2	chr1:168927600-168930000	Enhancers	Brain Hippocampus Middle	brain
3	chr1:168928000-168930000	Weak transcription	Fetal Intestine Large	intestine
4	chr1:168928200-168931000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:168928400-168932600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:168928600-168930000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:168928600-168930000	Weak transcription	Fetal Intestine Small	intestine
8	chr1:168928800-168929600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:168928800-168930200	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr1:168929000-168930000	Weak transcription	Left Ventricle	heart
11	chr1:168929000-168930200	Weak transcription	Ovary	ovary
12	chr1:168929000-168930600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr1:168929200-168930000	Enhancers	Brain Substantia Nigra	brain
14	chr1:168929200-168930600	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr1:168929400-168930000	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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