Variant report

Variant	rs12037139
Chromosome Location	chr1:168908969-168908970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10489368	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11590068	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12040207	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1575330	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16861785	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61302106	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61562132	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73043982	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs992325	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168907800-168909600	Enhancers	Fetal Intestine Small	intestine
2	chr1:168907800-168909800	Enhancers	Fetal Intestine Large	intestine
3	chr1:168908000-168910000	Enhancers	Hela-S3	cervix
4	chr1:168908400-168909000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:168908400-168909800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:168908600-168909400	Enhancers	Fetal Heart	heart
7	chr1:168908600-168910200	Enhancers	Duodenum Mucosa	Duodenum
8	chr1:168908600-168910200	Enhancers	Stomach Mucosa	stomach
9	chr1:168908800-168909200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr1:168908800-168909400	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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