Variant report

Variant	rs10024014
Chromosome Location	chr4:175637324-175637325
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10000456	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs10001193	0.88[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs10007631	1.00[CEU][hapmap]
rs10013669	0.89[ASW][hapmap];0.86[CEU][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap]
rs10030338	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2200459	1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4618291	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs4695953	1.00[CHB][hapmap]
rs4695954	1.00[CHB][hapmap];0.80[MEX][hapmap]
rs72706186	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9993143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1018390	chr4:175475505-175969742	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv880584	chr4:175505749-175644689	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175635000-175638400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:175635200-175637800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:175635200-175638800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:175635400-175638600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:175635400-175638800	Weak transcription	Colon Smooth Muscle	Colon
6	chr4:175635600-175638600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:175637000-175637600	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:175637000-175637800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr4:175637200-175638000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr4:175637200-175638000	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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