Variant report

Variant	rs10025252
Chromosome Location	chr4:129446873-129446874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:129431000..129433214-chr4:129445152..129447888,2	MCF-7	breast:
2	chr4:129375149..129377184-chr4:129445453..129446984,2	MCF-7	breast:
3	chr4:129443916..129449166-chr4:129482334..129486119,6	MCF-7	breast:
4	chr4:129445729..129448146-chr4:129730722..129732888,3	MCF-7	breast:
5	chr4:129444037..129452105-chr4:129473073..129478954,15	MCF-7	breast:
6	chr4:129209851..129212026-chr4:129445619..129448171,2	MCF-7	breast:
7	chr4:129445982..129449153-chr4:129476591..129479369,3	MCF-7	breast:
8	chr4:129445846..129447504-chr4:129730379..129732536,2	MCF-7	breast:
9	chr4:129304978..129307825-chr4:129445122..129446888,2	MCF-7	breast:
10	chr4:129444481..129446282-chr4:129446445..129448090,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000077684	Chromatin interaction
ENSG00000251432	Chromatin interaction
ENSG00000273077	Chromatin interaction
ENSG00000164040	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10020418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1216403	1.00[AMR][1000 genomes]
rs17013309	1.00[AMR][1000 genomes]
rs28422810	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28612367	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28670624	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28689154	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60266924	1.00[AMR][1000 genomes]
rs60416613	1.00[AMR][1000 genomes]
rs6835797	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129437600-129447400	Enhancers	HUVEC	blood vessel
2	chr4:129439200-129449400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:129439200-129450000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:129440200-129450000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:129440400-129450000	Weak transcription	Fetal Stomach	stomach
6	chr4:129441000-129450000	Weak transcription	Ovary	ovary
7	chr4:129441200-129450000	Weak transcription	Psoas Muscle	Psoas
8	chr4:129443400-129450000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr4:129443600-129447200	Weak transcription	Fetal Heart	heart
10	chr4:129443600-129448600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:129443600-129450200	Weak transcription	Lung	lung
12	chr4:129444000-129449000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:129444800-129447400	Enhancers	Hela-S3	cervix
14	chr4:129444800-129450000	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:129444800-129451000	Enhancers	HSMM	muscle
16	chr4:129444800-129451000	Enhancers	Osteobl	bone
17	chr4:129445000-129447800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:129445000-129451000	Enhancers	NHDF-Ad	bronchial
19	chr4:129445200-129447000	Enhancers	Placenta	Placenta
20	chr4:129445200-129447600	Enhancers	NH-A	brain
21	chr4:129445200-129448000	Enhancers	Stomach Mucosa	stomach
22	chr4:129445200-129448000	Enhancers	HMEC	breast
23	chr4:129445200-129448000	Enhancers	HSMMtube	muscle
24	chr4:129445200-129448000	Enhancers	NHEK	skin
25	chr4:129445200-129448200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:129445200-129448600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:129445200-129451000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr4:129445400-129447400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:129445400-129447400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:129445400-129447400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr4:129445400-129447400	Enhancers	Fetal Muscle Leg	muscle
32	chr4:129445400-129447600	Enhancers	NHLF	lung
33	chr4:129445400-129447800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr4:129445600-129447000	Enhancers	Left Ventricle	heart
35	chr4:129445800-129447400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr4:129445800-129449400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr4:129445800-129449600	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr4:129446000-129447000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr4:129446200-129447800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr4:129446200-129447800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:129446200-129450000	Weak transcription	Aorta	Aorta
42	chr4:129446200-129450000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr4:129446200-129450400	Weak transcription	Gastric	stomach
44	chr4:129446400-129447400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:129446400-129449200	Enhancers	A549	lung
46	chr4:129446600-129447400	Enhancers	K562	blood
47	chr4:129446800-129447000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:129446800-129447000	Enhancers	Adipose Nuclei	Adipose
49	chr4:129446800-129447400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:129446800-129447600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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