Variant report

Variant	rs6835797
Chromosome Location	chr4:129404613-129404614
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:129401585..129404888-chr4:129407114..129410717,4	K562	blood:
2	chr4:129403296..129405086-chr4:129433123..129435816,2	K562	blood:
3	chr4:129392127..129393841-chr4:129403776..129406090,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LARP1B-1	chr4:129404484-129404642	ENSG00000251432
2	lnc-LARP1B-1	chr4:129404484-129404642	NONHSAT098270

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10020418	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10025252	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1216403	1.00[AMR][1000 genomes]
rs17013309	1.00[AMR][1000 genomes]
rs28422810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28612367	1.00[AMR][1000 genomes]
rs28670624	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28689154	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60266924	1.00[AMR][1000 genomes]
rs60416613	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129376600-129406200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:129376600-129435000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:129388600-129406400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:129390200-129409000	Weak transcription	Fetal Heart	heart
5	chr4:129393000-129407000	Weak transcription	HMEC	breast
6	chr4:129396000-129410600	Weak transcription	Esophagus	oesophagus
7	chr4:129400200-129406200	Strong transcription	A549	lung
8	chr4:129403000-129405000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:129403200-129406000	Enhancers	NHDF-Ad	bronchial
10	chr4:129403600-129422200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:129404000-129404800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:129404000-129404800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr4:129404000-129405000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:129404200-129405400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:129404200-129405400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:129404400-129405600	Weak transcription	Left Ventricle	heart
17	chr4:129404600-129405600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr4:129404600-129405600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:129404600-129405600	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:129404600-129405800	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr4:129404600-129406000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr4:129404600-129406000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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