Variant report

Variant	rs10026687
Chromosome Location	chr4:75148509-75148510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:75124334..75127975-chr4:75147199..75149454,4	K562	blood:
2	chr4:75143302..75145646-chr4:75147933..75149559,2	K562	blood:
3	chr4:75093661..75096004-chr4:75147885..75149545,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10009707	0.87[EUR][1000 genomes]
rs10010575	0.83[EUR][1000 genomes]
rs10013212	0.93[EUR][1000 genomes]
rs10017409	0.90[EUR][1000 genomes]
rs10017417	0.85[EUR][1000 genomes]
rs10018373	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10019396	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs10023519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10028285	0.89[EUR][1000 genomes]
rs1037824	0.93[EUR][1000 genomes]
rs10938112	0.93[EUR][1000 genomes]
rs11737662	0.85[EUR][1000 genomes]
rs11942725	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs11945418	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1246575	0.83[EUR][1000 genomes]
rs1246577	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs1246578	0.83[EUR][1000 genomes]
rs1246579	0.83[EUR][1000 genomes]
rs1246580	0.82[EUR][1000 genomes]
rs1246582	0.84[EUR][1000 genomes]
rs1246584	0.84[EUR][1000 genomes]
rs1246586	0.84[EUR][1000 genomes]
rs1246587	0.84[EUR][1000 genomes]
rs1246588	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs1246590	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs1246591	0.81[EUR][1000 genomes]
rs1246594	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1246597	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs12500697	0.83[EUR][1000 genomes]
rs1265327	0.84[EUR][1000 genomes]
rs1380561	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs1460017	0.81[EUR][1000 genomes]
rs16850862	0.83[CEU][hapmap];0.90[EUR][1000 genomes]
rs16850883	0.87[CEU][hapmap];0.93[EUR][1000 genomes]
rs16850941	0.89[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes]
rs17232394	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17829765	0.82[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2045616	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs2045617	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs2061508	0.87[EUR][1000 genomes]
rs2367555	0.81[EUR][1000 genomes]
rs2367745	0.81[EUR][1000 genomes]
rs28378517	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28436705	0.91[EUR][1000 genomes]
rs28539097	0.88[EUR][1000 genomes]
rs28644493	0.87[EUR][1000 genomes]
rs4502653	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs488440	0.84[EUR][1000 genomes]
rs58813617	0.80[EUR][1000 genomes]
rs62312513	0.85[EUR][1000 genomes]
rs62312515	0.87[EUR][1000 genomes]
rs62312545	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6446983	0.86[EUR][1000 genomes]
rs6446984	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs6446985	0.89[EUR][1000 genomes]
rs6814880	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs6819605	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs6820992	0.87[CEU][hapmap];0.93[EUR][1000 genomes]
rs6821664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6835734	0.86[CEU][hapmap];0.92[EUR][1000 genomes]
rs6854203	0.86[EUR][1000 genomes]
rs6854723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858809	0.81[EUR][1000 genomes]
rs715844	0.82[EUR][1000 genomes]
rs7659389	0.87[EUR][1000 genomes]
rs7665105	0.87[EUR][1000 genomes]
rs7670535	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7672588	0.88[EUR][1000 genomes]
rs7680463	0.82[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs9684145	0.81[EUR][1000 genomes]
rs9992393	0.87[EUR][1000 genomes]
rs9997322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9997788	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75119800-75148800	Weak transcription	Aorta	Aorta
2	chr4:75125200-75158800	Weak transcription	Left Ventricle	heart
3	chr4:75132200-75157800	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:75133800-75160000	Weak transcription	Liver	Liver
5	chr4:75134000-75173800	Weak transcription	Primary T cells from cord blood	blood
6	chr4:75134400-75148800	Weak transcription	HSMM	muscle
7	chr4:75134800-75148800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:75141800-75151200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:75144000-75153200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:75144400-75162000	Weak transcription	Primary B cells from cord blood	blood
11	chr4:75144600-75149200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:75144800-75149400	Weak transcription	K562	blood
13	chr4:75145600-75150400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:75147200-75154200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:75147600-75149200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:75147600-75149200	Enhancers	HMEC	breast
17	chr4:75147600-75149200	Enhancers	NHEK	skin
18	chr4:75147600-75160400	Weak transcription	Adipose Nuclei	Adipose
19	chr4:75147800-75150000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:75148200-75149200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:75148200-75149400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr4:75148200-75149400	Enhancers	Hela-S3	cervix
23	chr4:75148400-75148800	Enhancers	Esophagus	oesophagus
24	chr4:75148400-75149400	Enhancers	Osteobl	bone
25	chr4:75148400-75150000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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