Variant report

Variant	rs2045617
Chromosome Location	chr4:75158232-75158233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:75130020..75132229-chr4:75157773..75159688,2	MCF-7	breast:
2	chr4:75155655..75159395-chr4:75160422..75166473,8	K562	blood:
3	chr4:75154072..75156773-chr4:75157944..75159747,2	MCF-7	breast:
4	chr4:75141137..75144749-chr4:75154918..75158355,4	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10009707	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs10010575	0.82[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10013212	0.87[EUR][1000 genomes]
rs10017409	0.91[CEU][hapmap];0.97[EUR][1000 genomes]
rs10018373	0.85[EUR][1000 genomes]
rs10019396	0.88[EUR][1000 genomes]
rs10023519	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs10026687	0.86[CEU][hapmap];0.93[EUR][1000 genomes]
rs10028285	0.96[EUR][1000 genomes]
rs1037824	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10433673	0.87[EUR][1000 genomes]
rs10938112	0.88[EUR][1000 genomes]
rs11724468	0.86[CEU][hapmap];0.83[EUR][1000 genomes]
rs11737662	0.80[EUR][1000 genomes]
rs11942725	0.81[EUR][1000 genomes]
rs13116896	0.87[EUR][1000 genomes]
rs13142241	0.84[EUR][1000 genomes]
rs1371796	0.83[EUR][1000 genomes]
rs1380561	0.82[EUR][1000 genomes]
rs1460016	0.85[EUR][1000 genomes]
rs16850862	0.95[CEU][hapmap];0.97[EUR][1000 genomes]
rs16850883	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16850941	0.81[EUR][1000 genomes]
rs17232394	0.93[EUR][1000 genomes]
rs17829765	0.81[EUR][1000 genomes]
rs1964526	0.86[EUR][1000 genomes]
rs2045616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2045618	0.82[EUR][1000 genomes]
rs2061508	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs2367555	0.88[EUR][1000 genomes]
rs2367745	0.80[CEU][hapmap];0.88[EUR][1000 genomes]
rs28378517	0.90[EUR][1000 genomes]
rs28436705	0.86[EUR][1000 genomes]
rs28539097	0.95[EUR][1000 genomes]
rs28644493	0.94[EUR][1000 genomes]
rs28695994	0.85[EUR][1000 genomes]
rs4371587	0.85[EUR][1000 genomes]
rs4502653	0.93[EUR][1000 genomes]
rs4694184	0.84[EUR][1000 genomes]
rs58813617	0.86[EUR][1000 genomes]
rs62312515	0.82[EUR][1000 genomes]
rs62312545	0.92[EUR][1000 genomes]
rs6446983	0.91[CEU][hapmap];0.93[EUR][1000 genomes]
rs6446984	0.95[CEU][hapmap];0.95[EUR][1000 genomes]
rs6446985	0.95[EUR][1000 genomes]
rs6814880	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6819605	0.95[CEU][hapmap];0.97[EUR][1000 genomes]
rs6820992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6821664	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs6835734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6854203	0.81[EUR][1000 genomes]
rs6854723	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs715844	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7659389	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs7663269	0.85[EUR][1000 genomes]
rs7665105	0.91[CEU][hapmap];0.94[EUR][1000 genomes]
rs7670535	0.92[EUR][1000 genomes]
rs7672588	0.91[CEU][hapmap];0.95[EUR][1000 genomes]
rs7680463	0.81[EUR][1000 genomes]
rs7681912	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs7683181	0.84[EUR][1000 genomes]
rs9992393	0.82[EUR][1000 genomes]
rs9997322	0.85[CEU][hapmap];0.92[EUR][1000 genomes]
rs9997788	0.81[CEU][hapmap];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1009099	chr4:75089233-75726206	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:75125200-75158800	Weak transcription	Left Ventricle	heart
2	chr4:75133800-75160000	Weak transcription	Liver	Liver
3	chr4:75134000-75173800	Weak transcription	Primary T cells from cord blood	blood
4	chr4:75144400-75162000	Weak transcription	Primary B cells from cord blood	blood
5	chr4:75147600-75160400	Weak transcription	Adipose Nuclei	Adipose
6	chr4:75149800-75186200	Weak transcription	K562	blood
7	chr4:75151400-75164600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:75154400-75160200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:75156000-75162000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:75156600-75165400	Weak transcription	Psoas Muscle	Psoas
11	chr4:75156600-75174200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr4:75157400-75159800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:75157600-75158600	Enhancers	NHEK	skin
14	chr4:75157800-75158400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:75157800-75158400	Enhancers	Osteobl	bone
16	chr4:75157800-75158600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr4:75157800-75159800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:75158000-75159200	Weak transcription	HMEC	breast
19	chr4:75158200-75159200	Weak transcription	HSMMtube	muscle

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