Variant report

Variant	rs10026820
Chromosome Location	chr4:55903584-55903585
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28837114	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34459736	0.87[ASN][1000 genomes]
rs4241988	0.91[ASN][1000 genomes]
rs57528857	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61158582	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6819898	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6820336	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6820371	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7681525	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv432603	chr4:55877236-55970782	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv524342	chr4:55891531-55921535	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55895800-55904600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:55896400-55904400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:55896800-55905000	Enhancers	HMEC	breast
4	chr4:55899600-55904600	Weak transcription	Right Ventricle	heart
5	chr4:55900400-55904800	Weak transcription	Right Atrium	heart
6	chr4:55900600-55903600	Weak transcription	Fetal Lung	lung
7	chr4:55901600-55903600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr4:55901800-55905400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:55902800-55904000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr4:55902800-55905200	Enhancers	Placenta Amnion	Placenta Amnion
11	chr4:55903000-55904200	Weak transcription	Left Ventricle	heart
12	chr4:55903200-55904200	Weak transcription	NHEK	skin
13	chr4:55903200-55904400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:55903200-55904400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:55903400-55905200	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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