Variant report
| Variant | rs6820371 |
|---|---|
| Chromosome Location | chr4:55907390-55907391 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10018070 | 0.95[ASN][1000 genomes] |
| rs10026820 | 0.92[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs13101523 | 0.90[ASN][1000 genomes] |
| rs13112551 | 0.97[ASN][1000 genomes] |
| rs13142103 | 0.95[ASN][1000 genomes] |
| rs13144674 | 0.89[ASN][1000 genomes] |
| rs13144875 | 0.88[ASN][1000 genomes] |
| rs28744674 | 0.97[ASN][1000 genomes] |
| rs28837114 | 0.88[AMR][1000 genomes] |
| rs34227858 | 0.90[ASN][1000 genomes] |
| rs4259119 | 0.95[ASN][1000 genomes] |
| rs4333248 | 0.93[ASN][1000 genomes] |
| rs4457012 | 1.00[ASN][1000 genomes] |
| rs4566712 | 0.97[ASN][1000 genomes] |
| rs4571397 | 0.90[ASN][1000 genomes] |
| rs4577640 | 0.90[ASN][1000 genomes] |
| rs4582210 | 0.94[ASN][1000 genomes] |
| rs4864529 | 0.95[ASN][1000 genomes] |
| rs4864530 | 0.94[ASN][1000 genomes] |
| rs4864949 | 0.98[ASN][1000 genomes] |
| rs5018667 | 0.92[ASN][1000 genomes] |
| rs57528857 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61158582 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6554226 | 0.91[ASN][1000 genomes] |
| rs6554228 | 0.97[ASN][1000 genomes] |
| rs6554229 | 0.97[ASN][1000 genomes] |
| rs66459610 | 0.95[ASN][1000 genomes] |
| rs66506770 | 0.95[ASN][1000 genomes] |
| rs6816847 | 0.88[ASN][1000 genomes] |
| rs6819898 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs6820336 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6844468 | 0.91[ASN][1000 genomes] |
| rs6845385 | 1.00[ASN][1000 genomes] |
| rs7661259 | 0.96[ASN][1000 genomes] |
| rs7677709 | 0.97[ASN][1000 genomes] |
| rs7679094 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv526344 | chr4:55522488-56231119 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv829939 | chr4:55856771-56005011 | Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv432603 | chr4:55877236-55970782 | Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv524342 | chr4:55891531-55921535 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:55907000-55907400 | ZNF genes & repeats | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
