Variant report

Variant	rs6554226
Chromosome Location	chr4:55890046-55890047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:55882690..55885444-chr4:55890043..55891620,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10018070	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs13101523	0.83[ASN][1000 genomes]
rs13111963	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs13112551	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13142103	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs13144674	0.83[ASN][1000 genomes]
rs13144875	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28744674	0.92[ASN][1000 genomes]
rs34227858	0.83[ASN][1000 genomes]
rs4259119	0.96[ASN][1000 genomes]
rs4333248	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4457012	0.91[ASN][1000 genomes]
rs4566712	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4571397	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4577640	0.83[ASN][1000 genomes]
rs4582210	0.97[ASN][1000 genomes]
rs4864529	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4864530	0.82[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4864949	0.93[ASN][1000 genomes]
rs5018667	0.88[ASN][1000 genomes]
rs57528857	0.90[ASN][1000 genomes]
rs6554225	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6554228	0.92[ASN][1000 genomes]
rs6554229	0.92[ASN][1000 genomes]
rs66459610	0.82[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs66506770	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6816847	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6820336	0.91[ASN][1000 genomes]
rs6820371	0.91[ASN][1000 genomes]
rs6844468	1.00[ASN][1000 genomes]
rs6845385	0.91[ASN][1000 genomes]
rs7658751	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7661259	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7677709	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7679094	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526344	chr4:55522488-56231119	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv829939	chr4:55856771-56005011	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv432603	chr4:55877236-55970782	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55884000-55891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:55884200-55891000	Weak transcription	HMEC	breast
3	chr4:55885600-55890600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:55885600-55891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:55886400-55893800	Weak transcription	Placenta Amnion	Placenta Amnion

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