Variant report

Variant	rs10026835
Chromosome Location	chr4:127700076-127700077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:127699741..127703647-chr4:127875173..127879234,5	K562	blood:
2	chr4:127628211..127630897-chr4:127699416..127701200,2	K562	blood:
3	chr4:127699281..127701495-chr4:128289836..128291541,2	K562	blood:
4	chr4:127699715..127702896-chr4:127704901..127707141,5	K562	blood:
5	chr4:127699055..127701009-chr4:127763669..127766462,2	K562	blood:
6	chr4:127654180..127661020-chr4:127693803..127700410,12	K562	blood:
7	chr4:127654180..127658212-chr4:127693803..127700290,9	K562	blood:
8	chr4:127687681..127689418-chr4:127698728..127701287,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10518508	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12332046	0.81[AFR][1000 genomes]
rs17011310	0.87[AMR][1000 genomes]
rs28503660	0.87[AMR][1000 genomes]
rs28620928	0.87[AMR][1000 genomes]
rs28648703	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28754305	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28869913	0.81[AFR][1000 genomes]
rs73848010	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1007477	chr4:127561735-127726291	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537244	chr4:127561735-127726291	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879907	chr4:127646765-127709859	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv879908	chr4:127646765-127749390	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv879909	chr4:127646765-127792639	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879910	chr4:127646765-127805466	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv879911	chr4:127646765-127835677	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127698200-127700400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:127698200-127700600	Weak transcription	HSMMtube	muscle
3	chr4:127698600-127715200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:127699400-127700200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:127699400-127700200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:127699400-127701000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:127699600-127700600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:127699600-127700600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:127699600-127700600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr4:127699800-127700200	Flanking Active TSS	K562	blood
11	chr4:127699800-127700400	Weak transcription	HSMM	muscle
12	chr4:127699800-127700600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr4:127700000-127700600	Enhancers	NHDF-Ad	bronchial
14	chr4:127700000-127706000	Weak transcription	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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