Variant report

Variant	rs17011310
Chromosome Location	chr4:127521237-127521238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10019530	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10026835	0.87[AMR][1000 genomes]
rs10027511	1.00[EUR][1000 genomes]
rs10033505	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10518508	0.87[AMR][1000 genomes]
rs11935158	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11944598	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1808036	1.00[EUR][1000 genomes]
rs1808037	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28410886	1.00[EUR][1000 genomes]
rs28497310	1.00[EUR][1000 genomes]
rs28648703	0.87[AMR][1000 genomes]
rs28707018	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28775994	0.89[AMR][1000 genomes]
rs28783114	1.00[EUR][1000 genomes]
rs28863549	1.00[EUR][1000 genomes]
rs4623016	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55890724	0.89[AMR][1000 genomes]
rs6849105	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6851103	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846055	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73846058	1.00[EUR][1000 genomes]
rs73846060	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73848010	0.87[AMR][1000 genomes]
rs9995088	0.89[AMR][1000 genomes]
rs9999892	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012833	chr4:127468474-127760933	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv537242	chr4:127468474-127760933	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv524850	chr4:127470903-127768849	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013854	chr4:127508969-127663216	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:127519400-127532800	Weak transcription	K562	blood
2	chr4:127521000-127521400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:127521000-127521400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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