Variant report

Variant	rs10027294
Chromosome Location	chr4:125255607-125255608
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:125255123..125255755-chr4:126165695..126166265,2	MCF-7	breast:
2	chr4:125255404..125257236-chr4:125632855..125634412,2	MCF-7	breast:
3	chr4:125255585..125257138-chr4:125353670..125355565,2	MCF-7	breast:
4	chr4:125255002..125255819-chr4:126204596..126205223,2	MCF-7	breast:
5	chr4:125254607..125257122-chr4:125631986..125634791,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10001440	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10003154	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10010227	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012961	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10013370	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019486	1.00[AMR][1000 genomes]
rs10019630	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10027794	1.00[AMR][1000 genomes]
rs10031876	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10050287	1.00[AMR][1000 genomes]
rs10213036	1.00[AMR][1000 genomes]
rs10222808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10470920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28375948	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28430925	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445476	1.00[AMR][1000 genomes]
rs28473649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28475344	1.00[AMR][1000 genomes]
rs28524723	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28555360	1.00[AMR][1000 genomes]
rs28582977	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28595372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28623216	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28673554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690319	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28691138	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28750428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28750489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28794011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28827314	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28841956	1.00[AMR][1000 genomes]
rs28847327	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28848204	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28873723	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9307539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9307540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9992929	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9997645	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv432624	chr4:125013395-125367740	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998024	chr4:125019384-125380876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537241	chr4:125019384-125380876	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1015049	chr4:125037090-125393067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125250800-125256600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr4:125252200-125258800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr4:125254800-125256000	Enhancers	HUVEC	blood vessel
4	chr4:125255400-125255800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:125255400-125255800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:125255400-125255800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:125255400-125255800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr4:125255400-125255800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:125255400-125255800	Enhancers	Liver	Liver
10	chr4:125255400-125255800	Enhancers	Fetal Kidney	kidney
11	chr4:125255400-125255800	Enhancers	Fetal Lung	lung
12	chr4:125255400-125258400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:125255600-125255800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:125255600-125255800	Enhancers	Hela-S3	cervix
15	chr4:125255600-125255800	Flanking Active TSS	NHDF-Ad	bronchial
16	chr4:125255600-125255800	Enhancers	Osteobl	bone
17	chr4:125255600-125256000	Enhancers	Muscle Satellite Cultured Cells	--

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