Variant report

Variant	rs28445476
Chromosome Location	chr4:125263939-125263940
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10001440	1.00[AMR][1000 genomes]
rs10003154	1.00[AMR][1000 genomes]
rs10010227	1.00[AMR][1000 genomes]
rs10012163	1.00[AMR][1000 genomes]
rs10012961	1.00[AMR][1000 genomes]
rs10013370	1.00[AMR][1000 genomes]
rs10019486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019630	1.00[AMR][1000 genomes]
rs10027294	1.00[AMR][1000 genomes]
rs10027794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10031876	1.00[AMR][1000 genomes]
rs10050287	1.00[AMR][1000 genomes]
rs10213036	1.00[AMR][1000 genomes]
rs10222808	1.00[AMR][1000 genomes]
rs10470920	1.00[AMR][1000 genomes]
rs10471024	1.00[AMR][1000 genomes]
rs28375948	1.00[AMR][1000 genomes]
rs28430925	1.00[AMR][1000 genomes]
rs28473649	1.00[AMR][1000 genomes]
rs28475344	1.00[AMR][1000 genomes]
rs28524723	1.00[AMR][1000 genomes]
rs28555360	1.00[AMR][1000 genomes]
rs28582977	1.00[AMR][1000 genomes]
rs28595372	1.00[AMR][1000 genomes]
rs28623216	1.00[AMR][1000 genomes]
rs28673554	1.00[AMR][1000 genomes]
rs28690319	1.00[AMR][1000 genomes]
rs28691138	1.00[AMR][1000 genomes]
rs28750428	1.00[AMR][1000 genomes]
rs28750489	1.00[AMR][1000 genomes]
rs28794011	1.00[AMR][1000 genomes]
rs28827314	1.00[AMR][1000 genomes]
rs28847327	1.00[AMR][1000 genomes]
rs28848204	1.00[AMR][1000 genomes]
rs28873723	1.00[AMR][1000 genomes]
rs9307539	1.00[AMR][1000 genomes]
rs9307540	1.00[AMR][1000 genomes]
rs9992929	1.00[AMR][1000 genomes]
rs9997645	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv432624	chr4:125013395-125367740	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv998024	chr4:125019384-125380876	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537241	chr4:125019384-125380876	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1015049	chr4:125037090-125393067	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125255800-125264400	Weak transcription	NHDF-Ad	bronchial
2	chr4:125260400-125272200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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