Variant report

Variant	rs10027563
Chromosome Location	chr4:15340971-15340972
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15333755..15336308-chr4:15339247..15341290,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10018161	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10021583	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10033552	0.83[AFR][1000 genomes]
rs10033910	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16891755	0.88[YRI][hapmap]
rs28442010	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28445020	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28452706	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28472760	0.83[AFR][1000 genomes]
rs28608871	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28671464	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15330000-15341200	Weak transcription	Ovary	ovary
2	chr4:15334000-15341200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:15334800-15341400	Weak transcription	Aorta	Aorta
4	chr4:15335800-15341600	Weak transcription	Adipose Nuclei	Adipose
5	chr4:15335800-15342400	Weak transcription	Placenta	Placenta
6	chr4:15336200-15351400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr4:15337200-15341200	Weak transcription	Fetal Stomach	stomach
8	chr4:15338000-15341600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:15338400-15341400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:15338400-15342600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:15338400-15342800	Weak transcription	Lung	lung
12	chr4:15338400-15343200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:15338600-15342400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:15338600-15342400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:15338600-15342400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:15338600-15343000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:15338600-15343400	Weak transcription	Spleen	Spleen
18	chr4:15338600-15346600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr4:15338600-15346600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:15338800-15345400	Weak transcription	NH-A	brain
21	chr4:15339000-15341400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:15339200-15341200	Enhancers	Stomach Smooth Muscle	stomach
23	chr4:15339600-15342600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:15340000-15342600	Weak transcription	Fetal Brain Male	brain
25	chr4:15340200-15341200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr4:15340600-15341200	Enhancers	Fetal Kidney	kidney
27	chr4:15340600-15341200	Enhancers	Fetal Lung	lung
28	chr4:15340600-15341400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:15340600-15341400	Weak transcription	NHLF	lung
30	chr4:15340800-15341200	Enhancers	Colon Smooth Muscle	Colon
31	chr4:15340800-15341200	Enhancers	Rectal Smooth Muscle	rectum

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