Variant report

Variant	rs10033552
Chromosome Location	chr4:15342608-15342609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10018161	0.82[AFR][1000 genomes]
rs10021583	0.85[AFR][1000 genomes]
rs10027563	0.81[LWK][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes]
rs10033910	0.85[AFR][1000 genomes]
rs28442010	0.85[AFR][1000 genomes]
rs28445020	0.82[AFR][1000 genomes]
rs28452706	0.85[AFR][1000 genomes]
rs28472760	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28608871	0.85[AFR][1000 genomes]
rs28671464	0.85[AFR][1000 genomes]
rs28703277	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15336200-15351400	Enhancers	Placenta Amnion	Placenta Amnion
2	chr4:15338400-15342800	Weak transcription	Lung	lung
3	chr4:15338400-15343200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:15338600-15343000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:15338600-15343400	Weak transcription	Spleen	Spleen
6	chr4:15338600-15346600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:15338600-15346600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:15338800-15345400	Weak transcription	NH-A	brain
9	chr4:15341000-15346800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:15341400-15342800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:15341400-15342800	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr4:15341400-15342800	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr4:15341400-15343000	Active TSS	Fetal Intestine Large	intestine
14	chr4:15341400-15343200	Active TSS	Rectal Smooth Muscle	rectum
15	chr4:15341400-15343400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:15341400-15343400	Active TSS	Colon Smooth Muscle	Colon
17	chr4:15341600-15344800	Active TSS	Stomach Smooth Muscle	stomach
18	chr4:15342000-15344000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:15342200-15344400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr4:15342200-15350000	Weak transcription	Aorta	Aorta
21	chr4:15342400-15342800	Flanking Active TSS	Ovary	ovary
22	chr4:15342400-15343000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr4:15342400-15343000	Flanking Active TSS	Fetal Lung	lung
24	chr4:15342400-15343000	Bivalent Enhancer	NHLF	lung
25	chr4:15342400-15343200	Flanking Active TSS	Fetal Kidney	kidney
26	chr4:15342400-15344000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:15342400-15344000	Flanking Active TSS	Adipose Nuclei	Adipose
28	chr4:15342400-15344200	Bivalent Enhancer	NHDF-Ad	bronchial
29	chr4:15342400-15344400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:15342400-15344400	Enhancers	Placenta	Placenta
31	chr4:15342600-15342800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:15342600-15343000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr4:15342600-15343200	Flanking Active TSS	Fetal Stomach	stomach
34	chr4:15342600-15343800	Enhancers	Fetal Muscle Leg	muscle
35	chr4:15342600-15355600	Weak transcription	Right Atrium	heart

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