Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1037042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13116689	1.00[ASN][1000 genomes]
rs1444954	1.00[ASN][1000 genomes]
rs1444958	1.00[ASN][1000 genomes]
rs1444959	1.00[ASN][1000 genomes]
rs1444960	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1562149	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2028764	1.00[ASN][1000 genomes]
rs2028766	1.00[ASN][1000 genomes]
rs4693109	1.00[ASN][1000 genomes]
rs4693682	1.00[ASN][1000 genomes]
rs4693683	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6535536	1.00[ASN][1000 genomes]
rs6535537	1.00[ASN][1000 genomes]
rs895112	1.00[ASN][1000 genomes]
rs895113	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs895114	1.00[ASN][1000 genomes]
rs962304	1.00[ASN][1000 genomes]
rs972863	1.00[ASN][1000 genomes]
rs987949	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829997	chr4:85244076-85409405	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv829998	chr4:85299693-85473450	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85403200-85405800	ZNF genes & repeats	Lung	lung
2	chr4:85403400-85411600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr4:85404400-85405800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:85404800-85406000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr4:85405200-85406000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:85405400-85405800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr4:85405400-85405800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
8	chr4:85405400-85405800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
9	chr4:85405600-85405800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
10	chr4:85405600-85405800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
11	chr4:85405600-85405800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
12	chr4:85405600-85405800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:85405600-85405800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

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