Variant report
| Variant | rs13116689 |
|---|---|
| Chromosome Location | chr4:85364307-85364308 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10027841 | 1.00[ASN][1000 genomes] |
| rs1037042 | 1.00[ASN][1000 genomes] |
| rs1444954 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1444958 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1444959 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1444960 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1562149 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2028764 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2028766 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4693109 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4693682 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4693683 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6535536 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6535537 | 1.00[ASN][1000 genomes] |
| rs895112 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs895113 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs895114 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs962304 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs972863 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs987949 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829997 | chr4:85244076-85409405 | Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv829998 | chr4:85299693-85473450 | Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:85364200-85364400 | Flanking Active TSS | Pancreatic Islets | Pancreatic Islet |
