Variant report

Variant	rs10028709
Chromosome Location	chr4:152845946-152845947
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10517561	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11099832	0.92[EUR][1000 genomes]
rs11099833	0.93[EUR][1000 genomes]
rs11099834	0.95[EUR][1000 genomes]
rs11723898	0.93[EUR][1000 genomes]
rs11724664	0.96[EUR][1000 genomes]
rs11731150	0.98[EUR][1000 genomes]
rs12640963	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs13124587	0.96[EUR][1000 genomes]
rs17028150	0.98[EUR][1000 genomes]
rs1812168	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2007237	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs4696119	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs4696301	0.95[CEU][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes]
rs4696302	0.95[CEU][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes]
rs4696304	0.96[EUR][1000 genomes]
rs4696305	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4696306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152836200-152851000	Weak transcription	Fetal Thymus	thymus
2	chr4:152843200-152847400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:152843200-152847400	Weak transcription	HMEC	breast
4	chr4:152843600-152846000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:152843800-152847600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links