Variant report

Variant	rs17028150
Chromosome Location	chr4:152847971-152847972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152664924..152667297-chr4:152847686..152849611,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10028709	0.98[EUR][1000 genomes]
rs10517561	0.98[EUR][1000 genomes]
rs11099832	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11099833	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11099834	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11723898	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11724664	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11731150	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12640963	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13109860	0.82[AMR][1000 genomes]
rs13124587	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1812168	0.98[EUR][1000 genomes]
rs2007237	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2062329	0.81[AMR][1000 genomes]
rs4696119	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4696301	0.96[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4696302	0.96[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4696304	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4696305	0.98[EUR][1000 genomes]
rs4696306	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152836200-152851000	Weak transcription	Fetal Thymus	thymus
2	chr4:152847400-152848000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:152847600-152848000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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