Variant report

Variant	rs10028758
Chromosome Location	chr4:119904733-119904734
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:119903523..119905164-chr4:120413210..120416125,2	MCF-7	breast:
2	chr4:119903318..119905119-chr4:120133808..120135717,2	MCF-7	breast:
3	chr4:119904231..119906265-chr4:120215953..120218280,2	MCF-7	breast:
4	chr4:119903981..119906939-chr4:119947642..119950040,2	MCF-7	breast:
5	chr4:119903589..119905538-chr4:120130770..120132703,2	MCF-7	breast:
6	chr4:119902777..119905378-chr4:119907189..119909991,2	MCF-7	breast:
7	chr4:119904202..119904854-chr4:119960649..119961157,2	MCF-7	breast:
8	chr17:27717127..27719243-chr4:119902588..119905576,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000264808	Chromatin interaction
ENSG00000160551	Chromatin interaction
ENSG00000263719	Chromatin interaction
ENSG00000145390	Chromatin interaction
ENSG00000245958	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12500593	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4834733	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119896400-119907600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:119901400-119905400	Enhancers	Ovary	ovary
3	chr4:119901400-119907000	Enhancers	Psoas Muscle	Psoas
4	chr4:119901400-119911600	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:119902000-119904800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:119902000-119904800	Enhancers	NH-A	brain
7	chr4:119902200-119905800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:119902200-119906400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr4:119902600-119907000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:119903000-119905600	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:119903000-119909800	Weak transcription	Fetal Stomach	stomach
12	chr4:119903000-119910200	Enhancers	Colon Smooth Muscle	Colon
13	chr4:119903200-119904800	Enhancers	HMEC	breast
14	chr4:119903600-119905800	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr4:119903800-119904800	Weak transcription	Aorta	Aorta
16	chr4:119903800-119905600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:119903800-119905600	Weak transcription	Left Ventricle	heart
18	chr4:119903800-119905600	Weak transcription	Right Atrium	heart
19	chr4:119903800-119909800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr4:119904000-119905200	Weak transcription	Fetal Heart	heart
21	chr4:119904000-119905200	Enhancers	Stomach Smooth Muscle	stomach
22	chr4:119904000-119905400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr4:119904000-119909400	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr4:119904200-119908000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr4:119904200-119909200	Weak transcription	NHLF	lung
26	chr4:119904200-119909400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr4:119904200-119909600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:119904400-119904800	Flanking Active TSS	Right Ventricle	heart
29	chr4:119904400-119904800	Weak transcription	HSMMtube	muscle
30	chr4:119904400-119905200	Enhancers	HUVEC	blood vessel
31	chr4:119904400-119905400	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr4:119904600-119904800	Enhancers	Fetal Intestine Large	intestine
33	chr4:119904600-119906600	Enhancers	Adipose Nuclei	Adipose
34	chr4:119904600-119908600	Weak transcription	NHDF-Ad	bronchial
35	chr4:119904600-119908800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:119904600-119909400	Weak transcription	HSMM	muscle
37	chr4:119904600-119909400	Weak transcription	Osteobl	bone
38	chr4:119904600-119909800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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