Variant report

Variant	rs4834733
Chromosome Location	chr4:119907402-119907403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119902777..119905378-chr4:119907189..119909991,2	MCF-7	breast:
2	chr4:119905616..119908043-chr4:120213868..120216541,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10028758	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12500593	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1846	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1975841	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4834733	SYNPO2	cis	brain	seeQTL

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119896400-119907600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:119901400-119911600	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:119903000-119909800	Weak transcription	Fetal Stomach	stomach
4	chr4:119903000-119910200	Enhancers	Colon Smooth Muscle	Colon
5	chr4:119903800-119909800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:119904000-119909400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:119904200-119908000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr4:119904200-119909200	Weak transcription	NHLF	lung
9	chr4:119904200-119909400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:119904200-119909600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:119904600-119908600	Weak transcription	NHDF-Ad	bronchial
12	chr4:119904600-119908800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr4:119904600-119909400	Weak transcription	HSMM	muscle
14	chr4:119904600-119909400	Weak transcription	Osteobl	bone
15	chr4:119904600-119909800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:119904800-119909400	Weak transcription	HMEC	breast
17	chr4:119904800-119909600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:119904800-119909800	Weak transcription	NH-A	brain
19	chr4:119905400-119908000	Weak transcription	Ovary	ovary
20	chr4:119905800-119908200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:119906000-119908400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:119906200-119910200	Weak transcription	Fetal Heart	heart
23	chr4:119906600-119910200	Weak transcription	Adipose Nuclei	Adipose
24	chr4:119907000-119907600	Weak transcription	HSMMtube	muscle
25	chr4:119907000-119909400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:119907000-119909800	Weak transcription	Esophagus	oesophagus
27	chr4:119907000-119909800	Weak transcription	Fetal Muscle Leg	muscle
28	chr4:119907000-119909800	Weak transcription	Left Ventricle	heart
29	chr4:119907000-119909800	Weak transcription	Psoas Muscle	Psoas
30	chr4:119907000-119909800	Weak transcription	Right Atrium	heart
31	chr4:119907000-119910000	Weak transcription	Right Ventricle	heart
32	chr4:119907000-119910000	Enhancers	Stomach Smooth Muscle	stomach
33	chr4:119907000-119910400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr4:119907000-119912800	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr4:119907200-119907800	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links