Variant report

Variant	rs1975841
Chromosome Location	chr4:119908157-119908158
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:119902777..119905378-chr4:119907189..119909991,2	MCF-7	breast:
2	chr4:119907730..119909273-chr4:120132712..120134361,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145390	Chromatin interaction
ENSG00000178636	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4834733	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119901400-119911600	Enhancers	Rectal Smooth Muscle	rectum
2	chr4:119903000-119909800	Weak transcription	Fetal Stomach	stomach
3	chr4:119903000-119910200	Enhancers	Colon Smooth Muscle	Colon
4	chr4:119903800-119909800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr4:119904000-119909400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:119904200-119909200	Weak transcription	NHLF	lung
7	chr4:119904200-119909400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:119904200-119909600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:119904600-119908600	Weak transcription	NHDF-Ad	bronchial
10	chr4:119904600-119908800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:119904600-119909400	Weak transcription	HSMM	muscle
12	chr4:119904600-119909400	Weak transcription	Osteobl	bone
13	chr4:119904600-119909800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr4:119904800-119909400	Weak transcription	HMEC	breast
15	chr4:119904800-119909600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:119904800-119909800	Weak transcription	NH-A	brain
17	chr4:119905800-119908200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr4:119906000-119908400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:119906200-119910200	Weak transcription	Fetal Heart	heart
20	chr4:119906600-119910200	Weak transcription	Adipose Nuclei	Adipose
21	chr4:119907000-119909400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:119907000-119909800	Weak transcription	Esophagus	oesophagus
23	chr4:119907000-119909800	Weak transcription	Fetal Muscle Leg	muscle
24	chr4:119907000-119909800	Weak transcription	Left Ventricle	heart
25	chr4:119907000-119909800	Weak transcription	Psoas Muscle	Psoas
26	chr4:119907000-119909800	Weak transcription	Right Atrium	heart
27	chr4:119907000-119910000	Weak transcription	Right Ventricle	heart
28	chr4:119907000-119910000	Enhancers	Stomach Smooth Muscle	stomach
29	chr4:119907000-119910400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr4:119907000-119912800	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr4:119907800-119909000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:119907800-119909200	Weak transcription	HSMMtube	muscle
33	chr4:119907800-119912800	Weak transcription	Aorta	Aorta
34	chr4:119908000-119908800	Enhancers	Ovary	ovary
35	chr4:119908000-119910400	Enhancers	Pancreatic Islets	Pancreatic Islet
36	chr4:119908000-119910600	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr4:119908000-119921400	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links