Variant report

Variant	rs10028794
Chromosome Location	chr4:148510474-148510475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148509882..148511690-chr4:148787031..148789794,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10006729	0.87[ASN][1000 genomes]
rs11099659	0.87[ASN][1000 genomes]
rs11099660	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732778	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11945031	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4835089	0.86[ASN][1000 genomes]
rs4835426	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835427	0.81[ASN][1000 genomes]
rs4835428	0.83[ASN][1000 genomes]
rs6816928	0.84[ASN][1000 genomes]
rs6824051	0.87[ASN][1000 genomes]
rs6841995	0.85[ASN][1000 genomes]
rs6852226	0.87[ASN][1000 genomes]
rs6855339	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857300	0.87[ASN][1000 genomes]
rs6857532	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830110	chr4:148432125-148595119	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv428776	chr4:148432125-148595119	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148500000-148510800	Weak transcription	Ovary	ovary
2	chr4:148503600-148510800	Weak transcription	HSMM	muscle
3	chr4:148503600-148510800	Weak transcription	Osteobl	bone
4	chr4:148503800-148510800	Weak transcription	HSMMtube	muscle
5	chr4:148506600-148510800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:148507200-148511400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:148507400-148510800	Weak transcription	Fetal Stomach	stomach
8	chr4:148507600-148510800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:148508600-148510600	Weak transcription	NHDF-Ad	bronchial
10	chr4:148508600-148510800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:148508600-148510800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:148508800-148510600	Weak transcription	Fetal Lung	lung
13	chr4:148508800-148510800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:148508800-148510800	Weak transcription	NHLF	lung
15	chr4:148509200-148510600	Weak transcription	Brain Hippocampus Middle	brain
16	chr4:148509400-148511000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:148509400-148511400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr4:148509400-148512400	Enhancers	Hela-S3	cervix
19	chr4:148510200-148512400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr4:148510200-148520800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:148510400-148510600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr4:148510400-148510800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr4:148510400-148511000	Enhancers	Brain Substantia Nigra	brain
24	chr4:148510400-148511200	Enhancers	Brain Angular Gyrus	brain
25	chr4:148510400-148511200	Enhancers	Brain Cingulate Gyrus	brain
26	chr4:148510400-148511200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:148510400-148511400	Enhancers	Brain Anterior Caudate	brain
28	chr4:148510400-148512000	Enhancers	HUES48 Cell Line	embryonic stem cell

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