Variant report

Variant	rs4835426
Chromosome Location	chr4:148511746-148511747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148511550..148513191-chr4:148525701..148528628,2	K562	blood:
2	chr4:148440067..148441110-chr4:148510925..148512204,7	MCF-7	breast:
3	chr4:148081448..148083313-chr4:148510559..148512058,10	K562	blood:
4	chr4:148439745..148440641-chr4:148511561..148512087,2	K562	blood:
5	chr4:148031854..148032569-chr4:148511175..148512068,3	MCF-7	breast:
6	chr4:148031852..148032807-chr4:148511183..148512139,6	MCF-7	breast:
7	chr4:148078667..148079597-chr4:148511157..148512035,4	MCF-7	breast:
8	chr4:148018109..148018832-chr4:148511578..148512144,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10006729	0.87[ASN][1000 genomes]
rs10028794	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11099659	0.87[ASN][1000 genomes]
rs11099660	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732778	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11945031	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4835089	0.86[ASN][1000 genomes]
rs4835427	0.81[ASN][1000 genomes]
rs4835428	0.83[ASN][1000 genomes]
rs6816928	0.84[ASN][1000 genomes]
rs6824051	0.87[ASN][1000 genomes]
rs6841995	0.85[ASN][1000 genomes]
rs6852226	0.87[ASN][1000 genomes]
rs6855339	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857300	0.87[ASN][1000 genomes]
rs6857532	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv830110	chr4:148432125-148595119	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv428776	chr4:148432125-148595119	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148509400-148512400	Enhancers	Hela-S3	cervix
2	chr4:148510200-148512400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:148510200-148520800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:148510400-148512000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:148510600-148512400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:148510800-148512000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:148510800-148512000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:148510800-148512000	Enhancers	Ovary	ovary
9	chr4:148510800-148512400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:148510800-148512600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:148510800-148512600	Enhancers	NHLF	lung
12	chr4:148511200-148512200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr4:148511200-148512600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:148511400-148512000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:148511400-148512000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:148511400-148512000	Active TSS	Brain Anterior Caudate	brain
17	chr4:148511600-148511800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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