Variant report

Variant	rs10029603
Chromosome Location	chr4:15811762-15811763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11574922	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs28411870	1.00[EUR][1000 genomes]
rs28429904	1.00[EUR][1000 genomes]
rs28454317	1.00[EUR][1000 genomes]
rs3796871	0.89[YRI][hapmap]
rs7690096	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7694167	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15794000-15812200	Genic enhancers	Dnd41	blood
2	chr4:15808000-15813200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:15808400-15819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:15810400-15811800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr4:15810800-15821600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:15811000-15811800	Enhancers	Primary T cells from cord blood	blood
7	chr4:15811200-15811800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr4:15811200-15818600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:15811400-15811800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:15811400-15813200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:15811400-15813400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:15811400-15813400	Weak transcription	Psoas Muscle	Psoas
13	chr4:15811400-15817800	Weak transcription	Fetal Thymus	thymus
14	chr4:15811400-15818600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr4:15811400-15818600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr4:15811400-15818800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr4:15811400-15819400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr4:15811400-15819800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr4:15811400-15820000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr4:15811400-15827000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr4:15811400-15851200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr4:15811400-15852200	Weak transcription	Spleen	Spleen
23	chr4:15811600-15811800	Enhancers	Thymus	Thymus
24	chr4:15811600-15811800	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr4:15811600-15818000	Weak transcription	Primary B cells from cord blood	blood
26	chr4:15811600-15818200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr4:15811600-15821600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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